prot_Ecto-sp13_S_contig9238.20816.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9238.20816.1
Unique Nameprot_Ecto-sp13_S_contig9238.20816.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length841
Homology
BLAST of mRNA_Ecto-sp13_S_contig9238.20816.1 vs. uniprot
Match: A0A6H5JP73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP73_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 8.130e-37
Identity = 169/605 (27.93%), Postives = 253/605 (41.82%), Query Frame = 0
Query:  237 ICRHASLRGQEMGREYDVFLGSAETAPLAWLRNSKSGMDRVVGSVLRGFEGP-SKVFWVFCCAPYIVWRGLGSSSFDHSVAGLIFGIAMLFLVASFGFFN-RSVSRAISPFKGRFDPIIAVFTVVATAS------SGASFVLSVLGDQ---PSVVEFILDAIVSLYVCSLYSLGNN--RGSRPANPEEWCNTCLGHGVEFAEVGIPLKVSRRVPDEMERDYAGTLGGSPWTAAVHDRRPCWQDVPHLTADGWELHGAGMDNDEVFAESGGRDRRKDAWLAAFISASLMDPHGSISD-PGARRRLSAVLVLLAQNAEQPPGWASACVTLE-----DLSEGRSDMADMHPWYDDIKKRAVVLAHRGVGLALEVADDAIAPHMKFPILARPKEIIKWAVIGCDPHLLLRQPFRQSTCREATTVGFFSLLR-----AIKAPRANNSLSSEILICLAGCAFAVGLKHFE---------HFEWTDLATAI-SVLGLIVLSAAELLGNFVAALAVLLCSRRGVVALMLLFGPPVVGWSRGLLDSVPLSLPFLCAVAGYYMPATVVALAQAIHGSVWYPGVAGRVGGGGAFGAG------SGCGAPFQERLLL 801
            + R  SL  QE+G   DV+ G     PLAWLR S    D + GS+L G +    K+  V   +    W        D   + ++   A  FL+ S   +N ++V+RAISPF    D +I +  ++A+ S      +G      +LG +   P+VV       V L +C L + G    R  R  + + W + C    V+F EVG+PL+   R      R Y GT+GG+  T  +    P  Q V  L + GW      +  +E FA  GG D   DAWLAAF+     +     +  P    R++A L  LA    +PP WA   VTL      D  E  S   +     D+   R VV++ +     L + D        FP+L RPKE+IK A+ G D  LL  QP RQ+     +    +  LR      I+    +N +   ++  L  C+     + +             W      +   L L+V +A  LL +    LA L+        ++   G  +VG+  G  D V + + F+  VA          + + ++   W PGV   +GGG     G       G   PFQ R+L+
Sbjct:  215 VRRRNSLASQEVGMT-DVYKGDVSYVPLAWLRCSPIASDWIAGSILCGLQSKFGKLLVVVYTSMATAWVWFEG---DRRWSSVLMA-ASTFLLGSLFLWNYQAVARAISPFGNTRDQLITL--ILASLSFFYSILAGLYHPRGMLGGEVWWPAVV-------VVLLICLLCAAGRECRRRDRRVDAKSWVSLCRRAAVDFQEVGMPLREVLRGSGADSRGYYGTIGGTQRTVRLQTNTPRGQPVT-LESSGWSQGELSLTGEEAFARCGGTDPTLDAWLAAFVGEVSENAFTLFNQGPAVVGRINACLAALAATTSKPPSWAEGIVTLSQVYAHDDRELVSAAMERGWTSDEFLLRRVVVSAKPERTILSLPDGFALEENVFPVLVRPKELIKIALRGSDYGLLTEQPNRQAGLAIESRSTLYDRLRLRGMVGIQDSYGSNHVGPLVVAALLACSVGPAWQGYAVQVLPLIGVFAMWRGWRYEVFEALSLVVETARGLLSDQACVLAGLVAGVISWHVIIAASGESLVGFLIG--DVVAVKVTFVVGVA----------MLRMVYSKQWSPGV--ELGGGDDQVEGLCHLALEGRPVPFQYRMLI 790          
BLAST of mRNA_Ecto-sp13_S_contig9238.20816.1 vs. uniprot
Match: D8LLB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB9_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.320e-33
Identity = 129/409 (31.54%), Postives = 182/409 (44.50%), Query Frame = 0
Query:  237 ICRHASLRGQEMGREYDVFLGSAETAPLAWLRNSKSGMDRVVGSVLRGFEGP-SKVFWVFCCAPYIVWRGLGSSSFDHSVAGLIFGIAMLFLVASFGFFN-RSVSRAISPFKGRFDPIIAVFTVVATAS------SGASFVLSVLGDQPSVVEFILDAIVSLYVCSLYSLGN--NRGSRPANPEEWCNTCLGHGVEFAEVGIPLKVSRRVPDEMERDYAGTLGGSPWTAAVHDRRPCWQDVPHLTADGWELHGAGMDNDEVFAESGGRDRRKDAWLAAFISASLMDPHGSISD-PGARRRLSAVLVLLAQNAEQPPGWASACVTLE-----DLSEGRSDMADMHPWYDDIKKRAVVLAHRGVGLALEVADDAIAPHMKFPILARPKEIIKWAVIGCDPHLLLRQPFRQS 629
            + R  S+  QE G   DV+ G     PLAWLR S    D + GS+L G +    ++  V   +    W        + SV       A  FL+ S   +N ++V+RAISPF    D +I +  ++A+ S      +G      +LG +   V +   AIV L VC L +     +R  R  + + W + C    V+F EVG+PL+   R      R Y GT+GG+  T  +    P  Q V  L   GW      +  +E FA  GG D   DAWLAAF+     +     +  P    R++A L  LA    +PP WA   VTL      D  E  S   +     D+   R VV++ +     L + D        FP+L RPKE+IK A+ G D  LL  QP RQ+
Sbjct:  217 VRRRNSMTTQENG-VTDVYKGDVSYVPLAWLRCSPIASDWIAGSILCGLQSKFGRLIVVVYTSMATAWVWFEGDRRESSVVMA----ASTFLLGSLFLWNYQAVARAISPFGNTRDQLITL--ILASLSFFYSILAGLYHPRGMLGGE---VWWPTIAIV-LLVCLLSATARECHRRDRRVDAKSWVSLCRRAAVDFQEVGMPLREVLRGSGADSRGYYGTIGGTQRTVRLQTNTPRGQPVT-LENSGWSQGELSLTGEEAFARCGGTDPTLDAWLAAFVGEVFENAFTLFNQGPAVVGRINACLAALAATTSKPPSWAEGIVTLSQVYAHDDRELISAAMERGWTSDEFLLRRVVVSAKPERTILSLPDGFALEENIFPVLVRPKELIKIALRGSDYGLLTEQPNRQA 613          
BLAST of mRNA_Ecto-sp13_S_contig9238.20816.1 vs. uniprot
Match: D8LLB8_ECTSI (TSPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB8_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.090e-32
Identity = 127/412 (30.83%), Postives = 182/412 (44.17%), Query Frame = 0
Query:  237 ICRHASLRGQEMGREYDVFLGSAETAPLAWLRNSKSGMDRVVGSVLRGFEGP-SKVFWVFCCAPYIVWRGLGSSSFDHSVAGLIFGIAMLFLVASFGFFN-RSVSRAISPFKGRFDPIIAVFTVVATAS------SGASFVLSVLGDQ---PSVVEFILDAIVSLYVCSLYSLGNN--RGSRPANPEEWCNTCLGHGVEFAEVGIPLKVSRRVPDEMERDYAGTLGGSPWTAAVHDRRPCWQDVPHLTADGWELHGAGMDNDEVFAESGGRDRRKDAWLAAFISASLMDPHGSISD-PGARRRLSAVLVLLAQNAEQPPGWASACVTLE-----DLSEGRSDMADMHPWYDDIKKRAVVLAHRGVGLALEVADDAIAPHMKFPILARPKEIIKWAVIGCDPHLLLRQPFRQS 629
            + R  SL  QE+G   DV+ G     PLAWLR S    D + GS+L G +    K+  V   +    W        D   + ++   A  FL+ S   +N ++V+RAISPF    D +I +  ++A+ S      +G      +LG +   P+VV      +       L + G    R  R  + + W + C    V+F EVG+PL+   R      R Y GT+GG+  T  +    P  Q V  L + GW      +  +E FA  GG D   DAWLAAF+     +     +  P    R++A L  LA    +PP WA   VTL      D  E  S   +     D+   R VV++ +     L + D        FP+L RPKE+IK A+ G D  LL  QP RQ+
Sbjct:  215 VRRRNSLASQEVGMT-DVYKGDVSYVPLAWLRCSPIASDWIAGSILCGLQSKFGKLLVVVYTSMATAWVWFEG---DRRWSSVVMA-ASTFLLGSLFLWNYQAVARAISPFGNTRDQLITL--ILASLSFFYSILAGLYHPRGMLGGEVWWPAVVXXXXXFL-------LCAAGRECRRRDRRVDAKSWVSLCRRAAVDFQEVGMPLREVLRGSGADSRGYYGTIGGTQRTVRLQTNTPRGQPVT-LESSGWSQGELSLTGEEAFARCGGTDPTLDAWLAAFVGEVFENAFTLFNQGPAVVGRINACLAALAATTSKPPSWAEGIVTLSQVYAHDDRELISAAMERGWTSDEFLLRRVVVSAKPERTILSLPDGFALEENIFPVLVRPKELIKIALRGSDYGLLTEQPNRQA 611          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9238.20816.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JP73_9PHAE8.130e-3727.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLB9_ECTSI2.320e-3331.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLB8_ECTSI1.090e-3230.83TSPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..334
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 738..742
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 655..675
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 379..398
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 676..686
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 743..763
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..314
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..373
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 399..654
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 374..378
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 712..717
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 335..353
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 718..737
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 687..711
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 764..840
NoneNo IPR availableTMHMMTMhelixcoord: 740..762
NoneNo IPR availableTMHMMTMhelixcoord: 379..398
NoneNo IPR availableTMHMMTMhelixcoord: 313..335
NoneNo IPR availableTMHMMTMhelixcoord: 717..736
NoneNo IPR availableTMHMMTMhelixcoord: 352..374
NoneNo IPR availableTMHMMTMhelixcoord: 690..712
NoneNo IPR availableTMHMMTMhelixcoord: 653..675

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9238contigEcto-sp13_S_contig9238:1739..4261 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9238.20816.1mRNA_Ecto-sp13_S_contig9238.20816.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9238 1620..5875 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9238.20816.1 ID=prot_Ecto-sp13_S_contig9238.20816.1|Name=mRNA_Ecto-sp13_S_contig9238.20816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=841bp
MAQQGHGVQEEAPGWRQWEWGNDFPHPGTTLDLPDAADLIAKFPEPATCM
PFLGGMWLSYSGDREVLITVPHRSGNVATPITILVGMMDEGMIERVDGRR
PYMCSGGTKYTTFCEDGVYGVPDREIIGQTTRVWGADLLDLPGPVRVVVQ
HGAGPPGGALRKNKTKVWFAATSPYVGGTTYPASWDEISFHQAPVSAAQR
ALRIARTVIVDNENLPQRAGYVDTLRSDFRKGERPGICRHASLRGQEMGR
EYDVFLGSAETAPLAWLRNSKSGMDRVVGSVLRGFEGPSKVFWVFCCAPY
IVWRGLGSSSFDHSVAGLIFGIAMLFLVASFGFFNRSVSRAISPFKGRFD
PIIAVFTVVATASSGASFVLSVLGDQPSVVEFILDAIVSLYVCSLYSLGN
NRGSRPANPEEWCNTCLGHGVEFAEVGIPLKVSRRVPDEMERDYAGTLGG
SPWTAAVHDRRPCWQDVPHLTADGWELHGAGMDNDEVFAESGGRDRRKDA
WLAAFISASLMDPHGSISDPGARRRLSAVLVLLAQNAEQPPGWASACVTL
EDLSEGRSDMADMHPWYDDIKKRAVVLAHRGVGLALEVADDAIAPHMKFP
ILARPKEIIKWAVIGCDPHLLLRQPFRQSTCREATTVGFFSLLRAIKAPR
ANNSLSSEILICLAGCAFAVGLKHFEHFEWTDLATAISVLGLIVLSAAEL
LGNFVAALAVLLCSRRGVVALMLLFGPPVVGWSRGLLDSVPLSLPFLCAV
AGYYMPATVVALAQAIHGSVWYPGVAGRVGGGGAFGAGSGCGAPFQERLL
LKVGCTAPWRVVEQNYTAHSIYFDGRSRRAHREYQVVALT*
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