prot_Ecto-sp13_S_contig9205.20786.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9205.20786.1
Unique Nameprot_Ecto-sp13_S_contig9205.20786.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length347
Homology
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 1.100e-194
Identity = 286/303 (94.39%), Postives = 292/303 (96.37%), Query Frame = 0
Query:   44 EQGTLKFGRQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGDXXXXXXXXMAGADGIGKDKDDDRDYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAEFGGVGQVGGQ 346
            EQGTLKFG+QKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGD        + G DG+GK+KDDD+DYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVV+TTVDG SGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAEFGGVGQVGGQ
Sbjct:  351 EQGTLKFGKQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGDDDEEG---IGGDDGVGKEKDDDKDYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVETTVDGKSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAEFGGVGQVGGQ 650          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 538 bits (1387), Expect = 4.190e-174
Identity = 275/299 (91.97%), Postives = 285/299 (95.32%), Query Frame = 0
Query:   44 EQGTLKFGRQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGD-DGDXXXXXXXXMAGADGIGKDKDDDRDYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAEFGGVG 341
            EQGTLKFG+QKEQSSYGGMDEEEKAIWKAMSGKEA+GGVLG+ DGD        M GADG+G DK+DDRDYFNLPN+SGARH KGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVD TV+G SGLAVQLEGSDFETVWQLKEGGVDGILNL+KLTSNDIWAVCQTYGVEAARASIV+EITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVG+FGTGMFDLRQPAEFGGVG
Sbjct: 1576 EQGTLKFGKQKEQSSYGGMDEEEKAIWKAMSGKEANGGVLGEEDGDDDGNDDEGMGGADGVGNDKNDDRDYFNLPNISGARHLKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDMTVEGKSGLAVQLEGSDFETVWQLKEGGVDGILNLDKLTSNDIWAVCQTYGVEAARASIVSEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGSFGTGMFDLRQPAEFGGVG 1874          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 270 bits (691), Expect = 5.050e-78
Identity = 151/299 (50.50%), Postives = 201/299 (67.22%), Query Frame = 0
Query:   45 QGTLKFGRQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGDXXXXXXXXMAGADG----IGKDKDDDRDYFNLPN-LSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQL--KEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAE 336
            QGTLKFGR+KEQ+SYG MD++EK +WKAM GK  D   L  D D         +  DG    +  D+ D  D+ +L   +   + F  +  NK +  V VT++ P+S+RRLLMVG+AE+AAA ++VRSH  I  +F+V+  + G + +A+Q EG+DF T+W L  +EGG   +L+L +L SN I+ +  +YGVEA RA+I  EI  VF  YGI VD RHLGL+AD+MTF GGYR +NR GM D +SP LQMSFETT  F+ +AA+    ++LKSPSARIVMG+VG+FGTG FDL  P E
Sbjct: 1366 QGTLKFGRKKEQASYGDMDDDEKEMWKAMKGKGGD--PLNSDDDGDDASDDGRSRGDGQTTQLDGDEQDGLDFLDLSTGVKNNQMFGRMDFNKASNTVTVTLKFPASVRRLLMVGIAEAAAATSVVRSHGKIGRSFLVEQLIGGENRMALQTEGADFATLWALGPREGGT--LLDLPQLASNHIYGMLMSYGVEACRAAITKEIAAVFAVYGIGVDARHLGLIADYMTFYGGYRAMNRIGMKDIASPFLQMSFETTASFLVQAALDSKVEKLKSPSARIVMGQVGDFGTGQFDLMVPVE 1660          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: W7TZA0_9STRA (DNA-directed RNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZA0_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.250e-57
Identity = 131/294 (44.56%), Postives = 179/294 (60.88%), Query Frame = 0
Query:   45 QGTLKFGRQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGDXXXXXXXXMAGADGIGKDKDDDRDYFNLPNLSGARH--FKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAE 336
            QGTL FGR++E+  Y   +EE+ +    + G +A G   G +           A     G   DD      +  ++   H  F+ +   ++TG   +T++  +S RRLLMV + E+AA +  V   KGI  AFVV+   DG    ++Q EG +   +W++     D  L+LN +TSNDIWA+ QTYGVEAARA+IV EI GVFGAYGIAVDPRHLGLVAD MT+ GG+R LNR GM++ SSP LQMSFETT  F+ +AA+    D L++PSA++VMG+    GTG FD+  P +
Sbjct:  981 QGTLSFGRKEERGEYEPDEEEDPS---EVVGDDASGIEEGVENSGEGQLSEVPAKQRRSGSRFDD------VAAVAKIDHPFFENLRFERETGVAHITLKTRASHRRLLMVSIVEAAAERCTVHVSKGIAQAFVVEGK-DGR--CSIQTEGCNLSELWEVG----DAALDLNNITSNDIWAMHQTYGVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVD 1258          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 209 bits (531), Expect = 1.220e-56
Identity = 112/212 (52.83%), Postives = 148/212 (69.81%), Query Frame = 0
Query:  125 FKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAE 336
            F+ +   ++TG   +T++  +S RRLLMV + E+AA +  VR  KGI  AFVV+   DG    ++Q EG +   +W++     D  L+LN +TSNDIWA+ QTYGVEAARA+IV EI GVFGAYGIAVDPRHLGLVAD MT+ GG+R LNR GM++ SSP LQMSFETT  F+ +AA+    D L++PSA++VMG+    GTG FD+  P +
Sbjct: 1644 FENLRFERETGVAHITLKTRASHRRLLMVSIVEAAAERCTVRVSKGIAQAFVVEGK-DGR--CSIQTEGCNLSELWEVG----DAALDLNNITSNDIWAMHQTYGVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVD 1848          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: A0A7S0PVI6_9STRA (DNA-directed RNA polymerase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVI6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.670e-53
Identity = 107/223 (47.98%), Postives = 138/223 (61.88%), Query Frame = 0
Query:  109 DDRDYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDL 331
            DD D  +     G   F  + KN+ T  +   + +P S R LLMVGL E AAA T+V + + I  A+  D    GN    +Q  G +F+  W L+       ++ NKL SNDIWA+ Q YGVEAAR +IV +I  VFGAYGI VDPRHL L+AD+MT++GG++ +NR GM + SS  LQMSFETT  FM  AA+A   + LKSPSA IV+G+    GTG FDL
Sbjct:   33 DDDDGNDFSGWEGGDGFVQVNKNQNTIMMRPML-VPPSARPLLMVGLVEQAAAVTLVSTRENITEAYTNDEDGRGN---CLQTAGCNFKEFWMLEN------VDHNKLMSNDIWAIHQAYGVEAARNNIVEQIRSVFGAYGIEVDPRHLSLIADYMTYEGGFKAMNRGGMEEISSAFLQMSFETTAAFMTNAALAGRKEYLKSPSANIVLGQPMKHGTGAFDL 245          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: A0A7S3HIX0_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIX0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.380e-52
Identity = 112/217 (51.61%), Postives = 138/217 (63.59%), Query Frame = 0
Query:  118 NLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQP 334
            NL  A        N++ G  EV +   +  RRLLM  L+E AAA TMVRS K I  A+ VD   +G +  AV  EG +FE +W ++EG    ++ +N++ SNDIW +  TYGVEAAR SIVAEI  VFG YGI VDPRHL L+AD MT +G + PLNRAGM    SP L+MSFE+T  F+ KAA    SD L+SPSARIV+G     GTG FDL  P
Sbjct:  473 NLLSAFRRDTFNYNEEEGWAEVELSFHARARRLLMAQLSEQAAAATMVRSTKSITNAYAVDE--EGQA--AVVTEGVNFEALWAMREG----LIKVNEIKSNDIWQLLCTYGVEAARHSIVAEIKNVFGVYGINVDPRHLSLIADFMTRNGSFTPLNRAGMNSCPSPFLRMSFESTCTFLTKAAQEGQSDNLQSPSARIVLGTTAKVGTGCFDLMLP 681          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: A0A7S1Z852_TRICV (DNA-directed RNA polymerase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z852_TRICV)

HSP 1 Score: 185 bits (470), Expect = 1.830e-52
Identity = 105/205 (51.22%), Postives = 136/205 (66.34%), Query Frame = 0
Query:  127 GITKNKKTGEVEVT-VRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFD 330
            GI+ ++KT  + +  + +  S R LLMVGL E AA KT+VRS + I  A++ D   DG  G  +Q  G +F   W+L        ++ N+L SND WAV   YGVEAARA+IV +I  VFG YGI VDPRHL L+AD+MT+DGGYR +NR GMAD SS  LQMSFETT +FM +AA+ +  + ++SPSA IVMGR    GTG F+
Sbjct:  127 GISIDRKTNTLILRPLTVDPSARPLLMVGLVEKAAEKTLVRSRQKISEAYISDE--DGGRGRCLQTAGVNFTEFWRLDR------VDHNRLMSNDTWAVRCAYGVEAARANIVDQIRSVFGVYGIEVDPRHLSLIADYMTYDGGYRAMNRIGMADASSSFLQMSFETTANFMVEAALNKRMEHMESPSANIVMGRPVRHGTGAFE 323          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: K3X8S6_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8S6_GLOUD)

HSP 1 Score: 193 bits (491), Expect = 2.590e-51
Identity = 122/309 (39.48%), Postives = 172/309 (55.66%), Query Frame = 0
Query:   44 EQGTLKFGRQKEQSSYGGMDEEEKAIWKAMSGKE---------------ADGGVLGDDGDXXXXXXXXMAGADGIGKDKDDDRDYFNLP-NLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDG--NSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQP 334
            EQGTL+FG + E + YG MDEE+K I  A                    A G   GD+GD        M+G+        D  +  N+P ++   ++F    +N K   VE  +R P+  + LLMV + E  A + +V+   GI   ++++  +         +Q EG +F+ +W       D IL++N+L +NDI+ V QTYGVEAARASI  +I  VFG YGI+VDPRHL L+AD+MT  GGY PLNR GM +  S   Q++FET+  F+ +AA+   SD L+SPSARI++G+    GTG F L QP
Sbjct: 1520 EQGTLRFGSRGEVNGYGEMDEEDKKIQNAQDSXXXXXXXXXXXXXXXXTAGGNTSGDEGDAMDSSN--MSGSKKTKSFVADGLESLNVPISVRKNKYFMYAGRNTKEHFVEFRLRFPTHSKTLLMVPIVERVAKQVLVQHCPGISRCYLINQRIGDAQEETPCIQTEGLNFQEIWSF-----DDILDVNQLATNDIYQVLQTYGVEAARASISKQINDVFGVYGISVDPRHLSLLADYMTAQGGYMPLNRMGMNNKGSSMQQITFETSMKFLTQAALGGLSDNLESPSARIILGQPPRVGTGSFSLLQP 1821          
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Match: A0A7S2WSR7_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSR7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.590e-51
Identity = 115/291 (39.52%), Postives = 174/291 (59.79%), Query Frame = 0
Query:   44 EQGTLKFGRQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGDXXXXXXXXMAGADGIGKDKDDDRDYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVWQLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQP 334
            E G L+ G++KE   Y   D+E  A  +A   +  DG V   +GD             G    +     +    + +G    KG     K+  V++ +R  ++MR++LMVG+AE+AA   +VR  KGI  +++++   + N+ +++Q +G +FE  W L +      + +N+L +ND+ A  +TYGVEAAR +IV E+ GVFGAYGI VDPRHLGLVAD+MTF+GGYRPLNR GM+  +SP ++M+FET+T F+  +A+    D L S S+R+ +G++   GTG FDL  P
Sbjct: 1556 ENGELRLGKKKEVEGY---DDESDA--EASEAESDDGDVEMKEGDEDGATGPVNKIEVGASASR-----FGCFVSCTGRPESKG-----KSATVKIVLRFEANMRKILMVGIAEAAAKTAIVRDTKGIEASYIIEGKGEDNT-VSIQTDGCNFEAAWNLADK-----IEVNRLKANDVGAFLRTYGVEAARGAIVREVKGVFGAYGIGVDPRHLGLVADYMTFEGGYRPLNRIGMSSNTSPFVRMTFETSTQFLTASALEGEEDALVSASSRLCVGQLMRTGTGAFDLLVP 1825          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9205.20786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY3_ECTSI1.100e-19494.39DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE4.190e-17491.97DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA5.050e-7850.50DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
W7TZA0_9STRA3.250e-5744.56DNA-directed RNA polymerase n=1 Tax=Nannochloropsi... [more]
K8YRY5_NANGC1.220e-5652.83DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A7S0PVI6_9STRA2.670e-5347.98DNA-directed RNA polymerase n=1 Tax=Asterionellops... [more]
A0A7S3HIX0_9STRA1.380e-5251.61DNA-directed RNA polymerase n=1 Tax=Spumella elong... [more]
A0A7S1Z852_TRICV1.830e-5251.22DNA-directed RNA polymerase n=2 Tax=Trieres chinen... [more]
K3X8S6_GLOUD2.590e-5139.48DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A7S2WSR7_9STRA2.590e-5139.52DNA-directed RNA polymerase subunit n=1 Tax=labyri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.390coord: 286..329
e-value: 5.7E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 18..333
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 150..334
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 160..282
e-value: 7.7E-20
score: 71.4
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 18..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9205contigEcto-sp13_S_contig9205:2423..6450 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9205.20786.1mRNA_Ecto-sp13_S_contig9205.20786.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9205 2423..6450 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9205.20786.1 ID=prot_Ecto-sp13_S_contig9205.20786.1|Name=mRNA_Ecto-sp13_S_contig9205.20786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
KRADGDEEEDDLEGEGSAIAQGKAGAKKASKAEAEYESDDEDEEQGTLKF
GRQKEQSSYGGMDEEEKAIWKAMSGKEADGGVLGDDGDDEDNGGNGMAGA
DGIGKDKDDDRDYFNLPNLSGARHFKGITKNKKTGEVEVTVRLPSSMRRL
LMVGLAESAAAKTMVRSHKGIRGAFVVDTTVDGNSGLAVQLEGSDFETVW
QLKEGGVDGILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGI
AVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKA
AVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAEFGGVGQVGGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR015699DNA-dir_RNA_pol1_lsu