prot_Ecto-sp13_S_contig9181.20756.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9181.20756.1
Unique Nameprot_Ecto-sp13_S_contig9181.20756.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length117
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9181.20756.1 vs. uniprot
Match: A0A6H5JBN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN4_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.880e-57
Identity = 106/117 (90.60%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MTAPASATTTRRMLGLAAVALAFAATNAATDSYVVDTTGGVSDAGPPSATYYYGSISDDGCGDGTIPVADNDTPAPTVSFRCITIDDDYTPSPTAAPTEAGGGVAGDAAAPTAAATT 117
            M  PASATTTRRMLGLAAVALA  ATNA TDSYVVDTTGGVSDAGPPSATYY GS+SDDGCGDGTIPV DNDTPAPTVS RCITIDDDYTPSPTAA TEAGGGVAGDAAAPTAAA T
Sbjct:    1 MMVPASATTTRRMLGLAAVALALVATNATTDSYVVDTTGGVSDAGPPSATYY-GSVSDDGCGDGTIPVVDNDTPAPTVSVRCITIDDDYTPSPTAADTEAGGGVAGDAAAPTAAAMT 116
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BLAST of mRNA_Ecto-sp13_S_contig9181.20756.1 vs. uniprot
Match: D8LSQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ6_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.410e-32
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0 
Query:   13 MLGLAAVALAFAATNAATDSYVVDTTGGVSDAGPPSATYYYGSISDDGCGDGTIPVADNDTPAPTVSFRCITI 85
            MLGLAAVALA AAT+A +DSYV DTTGGV+DAGPPSATYYYG+ SDDGCGDGTIPV DN+TP+PTVS RCITI
Sbjct:    1 MLGLAAVALALAATDATSDSYVADTTGGVTDAGPPSATYYYGAASDDGCGDGTIPVVDNETPSPTVSVRCITI 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9181.20756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBN4_9PHAE4.880e-5790.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ6_ECTSI9.410e-3283.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..117
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.745
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9181contigEcto-sp13_S_contig9181:2064..2414 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9181.20756.1mRNA_Ecto-sp13_S_contig9181.20756.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9181 2064..5934 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9181.20756.1 ID=prot_Ecto-sp13_S_contig9181.20756.1|Name=mRNA_Ecto-sp13_S_contig9181.20756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MTAPASATTTRRMLGLAAVALAFAATNAATDSYVVDTTGGVSDAGPPSAT
YYYGSISDDGCGDGTIPVADNDTPAPTVSFRCITIDDDYTPSPTAAPTEA
GGGVAGDAAAPTAAATT
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