prot_Ecto-sp13_S_contig9169.20740.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9169.20740.1
Unique Nameprot_Ecto-sp13_S_contig9169.20740.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length123
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9169.20740.1 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.430e-57
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0 
Query:   16 MDIEVISVDGQSDESNLEEGELDDEEIFSQEEPVQGEQDAEIPPQQQGQQHDLATDTIDLTAAGCEAAISHFEQEYNDLHRSAQGFGFPFEAVAELLLRHPEHWWCR 122
            MD+EVISVDGQSDESNLEEGEL DEEIFSQE+P QGEQDAEIPPQQQ QQHDLATDTIDLTAAGCEAAIS FEQEY+DLHRSAQGFGFPFEAVAELLLRHPEHWWCR
Sbjct:    1 MDVEVISVDGQSDESNLEEGELGDEEIFSQEQPAQGEQDAEIPPQQQEQQHDLATDTIDLTAAGCEAAISRFEQEYDDLHRSAQGFGFPFEAVAELLLRHPEHWWCR 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9169.20740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLI4_ECTSI2.430e-5793.46SEN1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.573

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9169contigEcto-sp13_S_contig9169:2701..3069 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9169.20740.1mRNA_Ecto-sp13_S_contig9169.20740.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9169 2701..3069 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9169.20740.1 ID=prot_Ecto-sp13_S_contig9169.20740.1|Name=mRNA_Ecto-sp13_S_contig9169.20740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
YFARVLVFPLLLGHAMDIEVISVDGQSDESNLEEGELDDEEIFSQEEPVQ
GEQDAEIPPQQQGQQHDLATDTIDLTAAGCEAAISHFEQEYNDLHRSAQG
FGFPFEAVAELLLRHPEHWWCR*
back to top