prot_Ecto-sp13_S_contig91161.20673.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig91161.20673.1
Unique Nameprot_Ecto-sp13_S_contig91161.20673.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length66
Homology
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: D8LQV4_ECTSI (Trafficking protein particle complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 8.100e-28
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR
Sbjct:  123 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 173          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: A0A835ZIA0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIA0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.410e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            EFVELPPQ+  LLYSN+LCGVIRGALEMVQMKV CR  RDVLRGDD+NEIR
Sbjct:  122 EFVELPPQHCELLYSNVLCGVIRGALEMVQMKVECRFARDVLRGDDLNEIR 172          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: A0A7S2V4X7_9STRA (Trafficking protein particle complex subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4X7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.170e-20
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    1 EFVELPPQY-SGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            EFVELPPQ+ S LLYSNLLCGVIRGALEMVQ+++ CR VRDVL+GD+VNEIR
Sbjct:  105 EFVELPPQFASSLLYSNLLCGVIRGALEMVQIRIECRFVRDVLQGDEVNEIR 156          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: A0A812VSV4_SYMMI (Trappc3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VSV4_SYMMI)

HSP 1 Score: 84.7 bits (208), Expect = 9.700e-20
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            EFVELPP Y+GL YSN+LCGVI+GALEMVQ++V CR V+D L+GDD NE+R
Sbjct:   47 EFVELPPAYAGLHYSNILCGVIKGALEMVQLQVECRFVKDTLKGDDTNELR 97          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: W7TW04_9STRA (Trafficking protein particle complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW04_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-19
Identity = 38/51 (74.51%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            +FVELPPQYSGL+YSN+LCGVIRGALEM++ +V CR V+D L+GD+VNEIR
Sbjct:  124 DFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIR 174          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: A0A2P6N5N3_9EUKA (Trafficking protein particle complex subunit n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N3_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 2.770e-19
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIRCARPTSIYRECPTVE 66
            +FVE+P QY  L+YSN+LCGVIRGALEMVQM V CR VRDVL+GDD +E++      +  E P  E
Sbjct:  121 DFVEVPEQYQSLVYSNILCGVIRGALEMVQMSVECRFVRDVLKGDDASELKVTLKAMLEEEVPVGE 186          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: A0A7S2DLH0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLH0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.080e-19
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            EF+ELPP Y+GL+YSN LCG IRGALEMVQ++  CR VRD LRGD+VNEI+
Sbjct:  120 EFIELPPAYNGLIYSNALCGAIRGALEMVQIRAQCRIVRDTLRGDEVNEIQ 170          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: A0A7S2SEE0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEE0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.300e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            EFVELP +Y+GL+YSN+LCG IRGALEM+Q++  C+ VRD L+GDDVNEI+
Sbjct:  121 EFVELPAEYTGLVYSNILCGAIRGALEMIQVRAQCKFVRDTLKGDDVNEIQ 171          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: I0YR75_COCSC (Trafficking protein particle complex subunit n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YR75_COCSC)

HSP 1 Score: 81.3 bits (199), Expect = 8.280e-18
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            +FVELP  YSGL+Y N+LCGVIRGALEMV + VSC  V+DVLRGDDV+E+R
Sbjct:  102 DFVELPESYSGLIYCNVLCGVIRGALEMVNITVSCSFVKDVLRGDDVSELR 152          
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Match: E1ZNY8_CHLVA (Trafficking protein particle complex subunit n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZNY8_CHLVA)

HSP 1 Score: 78.6 bits (192), Expect = 9.730e-17
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIR 51
            +FVELP Q   L YSNLLCGVIRGALEMV M V C  VRDVLRGDDV EIR
Sbjct:  104 DFVELPEQLGALKYSNLLCGVIRGALEMVNMDVECAFVRDVLRGDDVYEIR 154          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91161.20673.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV4_ECTSI8.100e-28100.00Trafficking protein particle complex subunit n=1 T... [more]
A0A835ZIA0_9STRA2.410e-2184.31Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2V4X7_9STRA5.170e-2080.77Trafficking protein particle complex subunit n=1 T... [more]
A0A812VSV4_SYMMI9.700e-2072.55Trappc3 protein n=1 Tax=Symbiodinium microadriatic... [more]
W7TW04_9STRA1.580e-1974.51Trafficking protein particle complex subunit n=2 T... [more]
A0A2P6N5N3_9EUKA2.770e-1959.09Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2DLH0_9STRA4.080e-1972.55Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2SEE0_9STRA3.300e-1868.63Trafficking protein particle complex subunit n=1 T... [more]
I0YR75_COCSC8.280e-1872.55Trafficking protein particle complex subunit n=2 T... [more]
E1ZNY8_CHLVA9.730e-1776.47Trafficking protein particle complex subunit n=1 T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 2..51
e-value: 3.5E-9
score: 36.5
NoneNo IPR availableGENE3D3.30.1380.20coord: 1..66
e-value: 9.3E-21
score: 75.9
IPR016721Bet3 familyPANTHERPTHR13048TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3coord: 1..53
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91161contigEcto-sp13_S_contig91161:6..203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91161.20673.1mRNA_Ecto-sp13_S_contig91161.20673.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig91161 6..203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig91161.20673.1 ID=prot_Ecto-sp13_S_contig91161.20673.1|Name=mRNA_Ecto-sp13_S_contig91161.20673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
EFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEI
RCARPTSIYRECPTVE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR016721Bet3
IPR024096NO_sig/Golgi_transp_ligand-bd