prot_Ecto-sp13_S_contig91.20653.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig91.20653.1
Unique Nameprot_Ecto-sp13_S_contig91.20653.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length149
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91.20653.1 vs. uniprot
Match: D8LMC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMC5_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 1.100e-92
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 0 
Query:    1 MSSTVPQISAKRPTTESAPAIWRLRFSLLVICGLLASAVPFAKGAEECAAATNGCKEDADCSECLTVGTLPTTCAPIATTCAEWWVMTCCMYGNSDACQENELLLNHLQCLAEGNDCAIDAVCPTLVDNGDEINNDIDGVADSSMELP 148
            MSSTVP ISAK+PTTESAPAIWRLRFSLL ICGLLASAVPFAKGAEECAAATNGCK DADC ECLT+  LPT CAPIATTCAEWWVMTCCMYGNSDACQENELLLNHLQCLAEGNDCAIDAVCPTLV +GDEINND+DG ADSS+ELP
Sbjct:    1 MSSTVPPISAKQPTTESAPAIWRLRFSLLAICGLLASAVPFAKGAEECAAATNGCKADADCLECLTIEALPTACAPIATTCAEWWVMTCCMYGNSDACQENELLLNHLQCLAEGNDCAIDAVCPTLVSDGDEINNDVDGAADSSIELP 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91.20653.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMC5_ECTSI1.100e-9290.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..148
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 26..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 37..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..44
score: 0.633

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91contigEcto-sp13_S_contig91:14378..15087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91.20653.1mRNA_Ecto-sp13_S_contig91.20653.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig91 14378..15225 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig91.20653.1 ID=prot_Ecto-sp13_S_contig91.20653.1|Name=mRNA_Ecto-sp13_S_contig91.20653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MSSTVPQISAKRPTTESAPAIWRLRFSLLVICGLLASAVPFAKGAEECAA
ATNGCKEDADCSECLTVGTLPTTCAPIATTCAEWWVMTCCMYGNSDACQE
NELLLNHLQCLAEGNDCAIDAVCPTLVDNGDEINNDIDGVADSSMELP*
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