prot_Ecto-sp13_S_contig9096.20648.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig9096.20648.1
Unique Name	prot_Ecto-sp13_S_contig9096.20648.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	283

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9096.20648.1 vs. uniprot
Match: A0A6H5JHB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB0_9PHAE)

HSP 1 Score: 384 bits (985), Expect = 1.480e-126
Identity = 196/233 (84.12%), Postives = 207/233 (88.84%), Query Frame = 0

Query:   20 DELVLQRPGNSRNRDRESDARAMATLDTSIVIAPSSPDPPASRERSPPGPSPSDSGDCWASPRFYSSSLVSNGSGGKPPSGSSGGGVIDNESANTGERSPHPGESRCLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQT------------ARVPVVLALRLTWVFGRMNDFVLNSGDRQWKCLEGLRLERFKSRSSPHRPKPRLVFDQEDSSF 240
            DELVLQ PGN+RNRDRESDARAM TLDTS +IAPSSPDPPASRERSPPGPSPSD G CW SP   +SSLVS+GSGGKPP+GSSGGGVIDNESANTG+RSPHPG SRCLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQT            +RVPVVL LRLTWV+GRMNDFVL++GDRQWK LE LRLERFKSRS PHRPKPRLVFDQE+SSF
Sbjct:   37 DELVLQIPGNARNRDRESDARAMVTLDTSRMIAPSSPDPPASRERSPPGPSPSDCGGCWGSPPIGTSSLVSDGSGGKPPTGSSGGGVIDNESANTGKRSPHPGGSRCLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQTPHSLWDPNVRTSSRVPVVLGLRLTWVYGRMNDFVLDTGDRQWKFLEVLRLERFKSRSRPHRPKPRLVFDQEESSF 269

[Close]

BLAST of mRNA_Ecto-sp13_S_contig9096.20648.1 vs. uniprot
Match: A0A6H5JJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW8_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 3.220e-87
Identity = 161/231 (69.70%), Postives = 171/231 (74.03%), Query Frame = 0

Query:   32 NRDRESDARAMATLDTSIVIAPSSPDPPASRERSPPGPSPSDSGDCWASPRFYSSSLVSNGSGGKPPSGSSGGGVIDNESANTG---ERSPHPGESRCLDAFAITLHQAYG-------GRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQ------------TARVPVVLALRLTWVFGRMNDFVLNSGDRQWKCLEGLRLERFKSRSSPHRPKPRLVFDQEDSSF 240
            NRDRE  AR M TLDTS VI+PSSPDPPASRERSPPGPS SD GDC  SP   S SLVSNGSGGKPPSGSSGGGVIDNE+ +     ERSPH G    L A  + L  +         G  GHWYKSTLQLQCV LALCSACRSVPT HVRID Q            ++RVPVVLALRLTWV GRMNDFVL++GDRQWK LE LRLERFKSRS PHRPKPRLVFDQE+SSF
Sbjct:   13 NRDREGGARGMVTLDTSRVISPSSPDPPASRERSPPGPSLSDCGDCSGSPPICSFSLVSNGSGGKPPSGSSGGGVIDNENGDXXXXXERSPHAGN---LQAGVVVLTPSLSPCIKLTAGGGGHWYKSTLQLQCVSLALCSACRSVPTLHVRIDGQAPHSLWDPNVRTSSRVPVVLALRLTWVCGRMNDFVLDTGDRQWKVLEVLRLERFKSRSRPHRPKPRLVFDQEESSF 240

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9096.20648.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9096.20648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JHB0_9PHAE	1.480e-126	84.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJW8_9PHAE	3.220e-87	69.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 240..261
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..239
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 262..282

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9096	contig	Ecto-sp13_S_contig9096:252..4183 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9096.20648.1	mRNA_Ecto-sp13_S_contig9096.20648.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig9096 248..4299 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig9096.20648.1 ID=prot_Ecto-sp13_S_contig9096.20648.1|Name=mRNA_Ecto-sp13_S_contig9096.20648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp
MGTSCSRPLLGPQSHCANTDELVLQRPGNSRNRDRESDARAMATLDTSIV
IAPSSPDPPASRERSPPGPSPSDSGDCWASPRFYSSSLVSNGSGGKPPSG
SSGGGVIDNESANTGERSPHPGESRCLDAFAITLHQAYGGRRGHWYKSTL
QLQCVCLALCSACRSVPTWHVRIDDQTARVPVVLALRLTWVFGRMNDFVL
NSGDRQWKCLEGLRLERFKSRSSPHRPKPRLVFDQEDSSFFFRLGIGATI
ILAVSVGQCLCRRCHSVETSISPSPKSYGQPP*