prot_Ecto-sp13_S_contig9072.20631.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9072.20631.1
Unique Nameprot_Ecto-sp13_S_contig9072.20631.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length497
Homology
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Match: D7FS21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS21_ECTSI)

HSP 1 Score: 682 bits (1759), Expect = 3.030e-241
Identity = 390/496 (78.63%), Postives = 408/496 (82.26%), Query Frame = 0
Query:    2 SSFGNTGYRKCQGKNCRPRGPPPSRHPQFHSHWWNRGTGQVSRGFWGPINGPAAVNAMRAVAAPTSGRRINRRLGQRGEAAAPGAAPAMERVSAPEASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANAEDGSRTGGVPAVAAFSSAGAAPAVGEEGXXXXXXXXXXXXXXXAACGECYQAETWRGRHDCHCSICGNKGFLVGGTTLSVARVYGRPEDLIACDGCPRAFHLGCLPVGTDSQLAATYRARADPWFCPTCAKMGRTSLVYQQQVPDWTVAETVRAKGDGAPLRLEDVISTSHPLFDAIKACALDGDREVLSKYRALEKNNPAVLQTRLNNEAKAAGRAAAGRAQAEMMRRPCEGATSATVTAPRYEGEWMPVIATPARDLQTPKPVVPVCELLLAAYQSTGLDGATAGNGRRTFEQLVGKISPNRLRTGASAVEGCGVFAADAIQPMDVLAEFTGERITRTVAGQRVAANRKMDFHV 497
            S+  NT  R+CQG+NCRP GP PS  P FHSHW N GTGQVSRGFWGPI+GPAA NA+RAVAAPTSGRR  +RLGQRGEAAA GA PAMERVSAPEASS      XXXXXXXXXXXXXX                 RA A+D SRTGGVP V + + AGAA       XXXXXXXXXXXXXXX ACGEC+Q ETWRGRHDCHCSICGNKG LVGGTTLSVARVYGRPEDLI+CDGCPRAFH  CLP GTDSQLAAT+RAR D WFC  C KMGRTSLVYQQ  PDWTV  TVRA+GDGAPL LEDVISTSHPLFD IKA AL GD+EVLSKYRALEKNNPAVLQTRLNNEA+AAGRAAAGRAQAEMMRRPCEGATSA        G+WMPV ATPARDLQT KPVVPVCELLLAAYQSTGLDG TAGNG+ TF+QL GKISPNRLRTGASAVEGCGVFAAD IQPMDVLAEFTGERITRTVA QRV A RKMDFHV
Sbjct:    9 SAVDNTEVRQCQGENCRPPGPAPSPVPSFHSHWGNSGTGQVSRGFWGPIDGPAAANALRAVAAPTSGRRKRQRLGQRGEAAATGAEPAMERVSAPEASSAAGGSTXXXXXXXXXXXXXXPPQRAEGREEGETQPPPRAKAQDSSRTGGVPVVGSSAPAGAAXXXXXXXXXXXXXXXXXXXXXXXACGECHQTETWRGRHDCHCSICGNKGILVGGTTLSVARVYGRPEDLISCDGCPRAFHRRCLPAGTDSQLAATFRARVDAWFCSHCTKMGRTSLVYQQN-PDWTVVATVRARGDGAPLFLEDVISTSHPLFDIIKAWALHGDKEVLSKYRALEKNNPAVLQTRLNNEAEAAGRAAAGRAQAEMMRRPCEGATSANA------GDWMPVNATPARDLQTSKPVVPVCELLLAAYQSTGLDGETAGNGQLTFQQLFGKISPNRLRTGASAVEGCGVFAADIIQPMDVLAEFTGERITRTVAQQRVVAYRKMDFHV 497          
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Match: D7G1Q1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q1_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 9.440e-126
Identity = 214/306 (69.93%), Postives = 223/306 (72.88%), Query Frame = 0
Query:   90 MERVSAPEASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANAEDGSRTGGVPAVAAFSSAGAAPAVGEEGXXXXXXXXXXXXXXXAACGECYQAETWRGRHDCHCSICGNKGFLVGGTTLSVARVYGRPEDLIACDGCPRAFHLGCLPVGTDSQLAATYRARADPWFCPTCAKMGRTSLVYQQQVPDWTVAETVRAKGDGAPLRLEDVISTSHPLFDAIKACALDGDREVLSKYRALEKNNPAVLQTRLNNEAKA-------AGRAAAGRAQAEMMRRPCEGATSATVTAPRYEGE 388
            MERVSAPEASS                                     RA A+D SRTGGVP V   + AGAAPA  EEG     XXXXXXXXXX ACGEC+Q ETWRGRHDCHCSICGNKG LVGGTTLSVARVYGRPEDLI+CDGCPRAFH  CLP GTDSQLAAT+RAR D WFC  C KMGRTSLVYQQ  PDWTV  TVRA+GDGAPL LEDVI TSHPLFDAIKAC L+ D EVLSKYRALEKNNPAVLQTRLNNEA+A       AGRAAAGRAQAEMMRRPCEGATSAT T   Y G+
Sbjct:    1 MERVSAPEASSAAGGSTATAPAGSATTAMAGPPQRAEGREEGETQPPPRAKAQDSSRTGGVPVVGPSAPAGAAPAADEEGKGRGAXXXXXXXXXXXACGECHQTETWRGRHDCHCSICGNKGVLVGGTTLSVARVYGRPEDLISCDGCPRAFHRRCLPAGTDSQLAATFRARVDAWFCSNCTKMGRTSLVYQQN-PDWTVVATVRARGDGAPLLLEDVIRTSHPLFDAIKACELNVDEEVLSKYRALEKNNPAVLQTRLNNEAEAEGRTAAAAGRAAAGRAQAEMMRRPCEGATSATATP--YTGD 303          
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Match: D7FI07_ECTSI (GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI07_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.210e-13
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0
Query:  224 VYGRPEDLIACDGCPRAFHLGCLPVGTDSQLAATYRARADPWFCPTCAKMGRTSLVYQQQVPDWT 288
            V G   D+  CD CPR FH  CLP+GTDS LAA ++   DPW+CP+C   GR +LV  ++ PDWT
Sbjct:  316 VCGESGDITCCDQCPRVFHEECLPIGTDSHLAAHHQTEKDPWYCPSCTDAGRVNLVAGRE-PDWT 379          
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Match: A0A6H5L4S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.610e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0
Query:  224 VYGRPEDLIACDGCPRAFHLGCLPVGTDSQLAATYRARADPWFCPTCAKMGRTSLVYQQQVPDWTVAETVR 294
            V G   D+  CD CPR FH  CLP+GT+S LAA ++   DPW+CP+C   GR +LV  ++ P+WT  +  R
Sbjct:  308 VCGESGDITCCDECPRVFHEECLPIGTNSHLAAHHQTEKDPWYCPSCTDAGRVNLVAGRE-PNWTPEDRAR 377          
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.250e-12
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0
Query:  226 GRPEDLIACDGCPRAFHLGCLPVGTDSQLAATYRARADPWFCPTCAKMGRTSLV----YQQQVPDWT 288
            G   DL  CD CPR FH  CLP+GTDS LAA  +   DPW+CP+C   GR +L+    ++++ P+WT
Sbjct:  891 GESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSCTDAGRVNLIAGDLHRKKEPNWT 957          
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.950e-12
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 0
Query:  226 GRPEDLIACDGCPRAFHLGCLPVGTDSQLAATYRARADPWFCPTCAKMGRTSLVYQQQVPDWT 288
            G   DL  CD CPR FH  CLP+GTDS LAA  +   DPW+CP+C   GR +L+  ++ P+WT
Sbjct:  791 GESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSCTDAGRVNLIAGKE-PNWT 852          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9072.20631.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FS21_ECTSI3.030e-24178.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1Q1_ECTSI9.440e-12669.93PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FI07_ECTSI2.210e-1352.31GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L4S9_9PHAE1.610e-1246.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY8_ECTSI2.250e-1247.76Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJY6_9PHAE2.950e-1250.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 203..271
e-value: 1.2E-8
score: 44.7
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 227..271
e-value: 2.6E-7
score: 30.4
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 201..273
score: 9.561
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 197..289
e-value: 8.6E-12
score: 46.5
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 200..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9072contigEcto-sp13_S_contig9072:597..5694 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9072.20631.1mRNA_Ecto-sp13_S_contig9072.20631.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9072 597..5694 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9072.20631.1 ID=prot_Ecto-sp13_S_contig9072.20631.1|Name=mRNA_Ecto-sp13_S_contig9072.20631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=497bp
HSSFGNTGYRKCQGKNCRPRGPPPSRHPQFHSHWWNRGTGQVSRGFWGPI
NGPAAVNAMRAVAAPTSGRRINRRLGQRGEAAAPGAAPAMERVSAPEASS
AAGGSTTTTPAGGATTATADPPQRAEGGGERETRPPPRANAEDGSRTGGV
PAVAAFSSAGAAPAVGEEGEGGGASGGGGSAAGGAACGECYQAETWRGRH
DCHCSICGNKGFLVGGTTLSVARVYGRPEDLIACDGCPRAFHLGCLPVGT
DSQLAATYRARADPWFCPTCAKMGRTSLVYQQQVPDWTVAETVRAKGDGA
PLRLEDVISTSHPLFDAIKACALDGDREVLSKYRALEKNNPAVLQTRLNN
EAKAAGRAAAGRAQAEMMRRPCEGATSATVTAPRYEGEWMPVIATPARDL
QTPKPVVPVCELLLAAYQSTGLDGATAGNGRRTFEQLVGKISPNRLRTGA
SAVEGCGVFAADAIQPMDVLAEFTGERITRTVAGQRVAANRKMDFHV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD