prot_Ecto-sp13_S_contig90555.20610.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig90555.20610.1
Unique Nameprot_Ecto-sp13_S_contig90555.20610.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length61
Homology
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.190e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:    1 PPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE 58
            PPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE
Sbjct:  240 PPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE 297          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A7R9U5W4_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5W4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.030e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    1 PPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFT 49
            PPPTL+LDLEGTL    ++RK GWR AKRPG DAFLKEMS+ YEIV+F+
Sbjct:  127 PPPTLILDLEGTLTRPEWSRKHGWRYAKRPGFDAFLKEMSKYYEIVLFS 175          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A7S3PUE5_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUE5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.280e-14
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 PPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            PP TLVLDLE TL+ + + RK GWR AKRPG+D FL EM+Q YEIV+++ S  G+A+ V
Sbjct:  193 PPHTLVLDLENTLVNSTWDRKHGWRFAKRPGVDKFLSEMAQYYEIVIYSPSHEGVAEPV 251          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A8J9X0N9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X0N9_PHATR)

HSP 1 Score: 73.6 bits (179), Expect = 1.320e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            P TLVLDLE TL+ + + R+ GWR AKRPG+D FL+E++Q YEIV+++ S+ G+AD V
Sbjct:   11 PHTLVLDLENTLVSSTWDRRYGWRHAKRPGVDKFLRELAQYYEIVLYSPSIDGIADPV 68          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A4RUZ3_OSTLU (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUZ3_OSTLU)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            P TLVLDL+ TL+ + + R++GWRV KRPG+DAFLK MSQ YE+V+FTD +    D +
Sbjct:   28 PHTLVLDLDDTLINSNWKRERGWRVFKRPGVDAFLKHMSQFYEMVIFTDQLMTYGDPI 85          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A448YW51_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW51_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.410e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            P TLVLDLE TL+ + + RK+GWR AKRPG+D FL +M+Q YEIV+++ S+ G+AD V
Sbjct:  169 PHTLVLDLENTLVSSSWDRKRGWRHAKRPGVDKFLLDMAQYYEIVLYSPSIDGIADPV 226          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A7S1BYC3_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYC3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.610e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            P TLVLDLE TL+ + + RK GWR AKRPG+D FL++M+Q YEIV++T ++ G+A+ V
Sbjct:  176 PHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPV 233          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A7S2GPP0_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPP0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.090e-13
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            PPTLVLDLEGTL+ + + R+ GWR AKRPG+D FL++M+Q YEIV+F+++   + + +
Sbjct:  138 PPTLVLDLEGTLVKSTWDRRHGWRHAKRPGVDKFLQDMAQYYEIVLFSNNTASIVEPI 195          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A7S1G064_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G064_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-13
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            P TLVLDLE TL+ + + RK GWR AKRPG+D FL++M+Q YEIV++T ++ G+A+ V
Sbjct:  176 PHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPV 233          
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Match: A0A7S4AKD5_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKD5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.150e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 59
            P TLVLDLE TL+ + + RK+GWR AKRPG+D FL +M+Q YEIV+++ S+ G+AD V
Sbjct:  195 PHTLVLDLEKTLVSSSWDRKRGWRHAKRPGVDKFLIDMAQYYEIVLYSPSIDGIADPV 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90555.20610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI3_ECTSI2.190e-30100.00Mitochondrial import inner membrane translocase su... [more]
A0A7R9U5W4_9STRA6.030e-1571.43Mitochondrial import inner membrane translocase su... [more]
A0A7S3PUE5_9STRA1.280e-1459.32Mitochondrial import inner membrane translocase su... [more]
A0A8J9X0N9_PHATR1.320e-1456.90Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A4RUZ3_OSTLU1.590e-1456.90Mitochondrial import inner membrane translocase su... [more]
A0A448YW51_9STRA4.410e-1458.62Mitochondrial import inner membrane translocase su... [more]
A0A7S1BYC3_9STRA7.610e-1456.90Mitochondrial import inner membrane translocase su... [more]
A0A7S2GPP0_9STRA1.090e-1353.45Mitochondrial import inner membrane translocase su... [more]
A0A7S1G064_9STRA1.140e-1356.90Mitochondrial import inner membrane translocase su... [more]
A0A7S4AKD5_9STRA1.150e-1358.62Mitochondrial import inner membrane translocase su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004274FCP1 homology domainPFAMPF03031NIFcoord: 4..59
e-value: 1.2E-15
score: 57.6
IPR004274FCP1 homology domainPROSITEPS50969FCP1coord: 1..61
score: 19.642
IPR023214HAD superfamilyGENE3D3.40.50.1000coord: 1..61
e-value: 7.4E-20
score: 72.9
NoneNo IPR availablePANTHERPTHR12210NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATEDcoord: 1..59
IPR027111Mitochondrial import inner membrane translocase subunit Tim50PANTHERPTHR12210:SF3MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50coord: 1..59
IPR036412HAD-like superfamilySUPERFAMILY56784HAD-likecoord: 2..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90555contigEcto-sp13_S_contig90555:51..529 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90555.20610.1mRNA_Ecto-sp13_S_contig90555.20610.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig90555 51..529 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig90555.20610.1 ID=prot_Ecto-sp13_S_contig90555.20610.1|Name=mRNA_Ecto-sp13_S_contig90555.20610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
PPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTD
SMGGLADEVGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004274FCP1_dom
IPR023214HAD_sf
IPR027111Tim50
IPR036412HAD-like_sf