prot_Ecto-sp13_S_contig9005.20559.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9005.20559.1
Unique Nameprot_Ecto-sp13_S_contig9005.20559.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length108
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9005.20559.1 vs. uniprot
Match: D7FYE2_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYE2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.760e-22
Identity = 53/64 (82.81%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:    1 MFCPRPARASPDLRKYFPHTHPLLLLHRAATRTRSFLAFVGLYTLVIALHEAGHLVAALSQGIK 64
            M  P PARAS  LRK+FP   PLLLLHRAATR RSFLAFVGL TLVIALHEAGHLVAALSQGIK
Sbjct:    1 MLYPHPARASSGLRKHFPTPPPLLLLHRAATRIRSFLAFVGLLTLVIALHEAGHLVAALSQGIK 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9005.20559.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYE2_ECTSI2.760e-2282.81PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..35
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..107
NoneNo IPR availableTMHMMTMhelixcoord: 36..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9005contigEcto-sp13_S_contig9005:4275..4598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9005.20559.1mRNA_Ecto-sp13_S_contig9005.20559.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9005 2400..5262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9005.20559.1 ID=prot_Ecto-sp13_S_contig9005.20559.1|Name=mRNA_Ecto-sp13_S_contig9005.20559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MFCPRPARASPDLRKYFPHTHPLLLLHRAATRTRSFLAFVGLYTLVIALH
EAGHLVAALSQGIKVRRVGINLQSRVAMTATHGYEGSGRGAPRPAPPRPS
FAPPFSM*
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