prot_Ecto-sp13_S_contig8990.20533.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8990.20533.1
Unique Nameprot_Ecto-sp13_S_contig8990.20533.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length227
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8990.20533.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 2.090e-96
Identity = 181/217 (83.41%), Postives = 185/217 (85.25%), Query Frame = 0 
Query:    1 MAGPTMGRLLPRRRTLAVFTLTVLLAVTGLFLAQPELLQQLTASHSRPQLRQSFEGGEGWILGLSLSLSFGCVDSDPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHYPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCRKDKVRCPKLCVMANVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQ 217
            MAGPT+GRLLPRRRT AVF+LT+LLAVTGLFLAQPELLQQLTASHSRPQLRQSFEGGE                 DPL          XXXXXXXXXXXXXXXXXXXX   YPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVC+KDKVRCPKLCVMA VLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQ
Sbjct:    1 MAGPTIGRLLPRRRTFAVFSLTLLLAVTGLFLAQPELLQQLTASHSRPQLRQSFEGGE-----------------DPLPGDSETAAATXXXXXXXXXXXXXXXXXXXXSFRYPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQ 200
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BLAST of mRNA_Ecto-sp13_S_contig8990.20533.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.580e-41
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 
Query:  141 MADVLEDVCRKDKVRCPKLCVMANVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQ 217
            MADVLEDVC+KDKVRCPKLCVMA VLYPELSLP+SRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQ
Sbjct:    1 MADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQ 77
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BLAST of mRNA_Ecto-sp13_S_contig8990.20533.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 9.030e-26
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0 
Query:  112 YPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCRKDKVRCPKLCVMANVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACR 215
            YP VVEKK VSS++RV+FLVGLEGTGHHY  +V +D C    V C   C +A  LYP L+ P ++  Y  AR+ LR E+E LAA+P E + EG++ +  F  CR
Sbjct:   54 YPAVVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCR 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8990.20533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMV4_ECTSI2.090e-9683.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA1_9PHAE2.580e-4196.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV3_ECTSI9.030e-2650.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..226
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availableTMHMMTMhelixcoord: 16..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8990contigEcto-sp13_S_contig8990:2943..6266 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8990.20533.1mRNA_Ecto-sp13_S_contig8990.20533.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8990 2943..6266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8990.20533.1 ID=prot_Ecto-sp13_S_contig8990.20533.1|Name=mRNA_Ecto-sp13_S_contig8990.20533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
MAGPTMGRLLPRRRTLAVFTLTVLLAVTGLFLAQPELLQQLTASHSRPQL
RQSFEGGEGWILGLSLSLSFGCVDSDPLPGDSETAAATPAPTPPPTPAPR
PPPTPTPFSFHYPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCR
KDKVRCPKLCVMANVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEES
LAEGESTVVSFGACRFQVRPTYPWCR*
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