prot_Ecto-sp13_S_contig8963.20502.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8963.20502.1
Unique Nameprot_Ecto-sp13_S_contig8963.20502.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length76
Homology
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A6H5KTH0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH0_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.100e-37
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0
Query:    1 MDKRVRVAAVLAGLVGMAMAQSGAGSTSGDMNENAASAGEGEPRQVGFWTAFANSVAMIVATEIGDKTFFIAAIMA 76
            MDKRVRVAAVLAGLVG+AMAQSG GSTSGDMNENAASAGEG+PRQVGFWTAFANSVAMI+ATEIGDKTFFIAAIMA
Sbjct:    1 MDKRVRVAAVLAGLVGVAMAQSGVGSTSGDMNENAASAGEGKPRQVGFWTAFANSVAMIIATEIGDKTFFIAAIMA 76          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: D7FN76_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN76_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 7.260e-35
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0
Query:    1 MDKRVRVAAVLAGLVGMAMAQSGAGSTSGDMNENAASAGEGEPRQVGFWTAFANSVAMIVATEIGDKTFFIAAIMA 76
            MDKRVRVAAVLAGLVG+ MAQSG GS+SGDMNENA SAGEGEP QVGFWTAFANSVAMI+ATEIGDKTFFIAAIMA
Sbjct:    1 MDKRVRVAAVLAGLVGVTMAQSGVGSSSGDMNENAVSAGEGEPPQVGFWTAFANSVAMIIATEIGDKTFFIAAIMA 76          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A0G4ET18_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ET18_VITBC)

HSP 1 Score: 54.7 bits (130), Expect = 7.010e-7
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0
Query:   35 AASAGEGEPRQVGFWTAFANSVAMIVATEIGDKTFFIAAIM 75
            A+SAGEG+    GFWTAFA S+  I+ +EIGDKTFFIAAI+
Sbjct:   78 ASSAGEGQQSHAGFWTAFAASLLNIIFSEIGDKTFFIAAIL 118          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: B7FUM2_PHATC (GDT1 family protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUM2_PHATC)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-6
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0
Query:   47 GFWTAFANSVAMIVATEIGDKTFFIAAIM 75
            GFW AF +SVAMI+ATEIGDKTFFIAA++
Sbjct:    3 GFWNAFTSSVAMIIATEIGDKTFFIAAVL 31          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A7S3PEH6_9STRA (GDT1 family protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PEH6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.200e-6
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0
Query:   46 VGFWTAFANSVAMIVATEIGDKTFFIAAIM 75
            VGFW AF +S+AMI+ATEIGDKTFFIAA++
Sbjct:   78 VGFWKAFTSSLAMIIATEIGDKTFFIAAVL 107          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A7S0DLR4_9EUKA (GDT1 family protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLR4_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 4.420e-6
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0
Query:   46 VGFWTAFANSVAMIVATEIGDKTFFIAAIMA 76
            V FW+AF  S+AMI+ATE+GDKTFFIAAIMA
Sbjct:  135 VEFWSAFVKSIAMIIATELGDKTFFIAAIMA 165          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A7S2LN18_9STRA (GDT1 family protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LN18_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.990e-5
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 0
Query:   48 FWTAFANSVAMIVATEIGDKTFFIAAIM 75
            FW AF NS++MI+ATEIGDKTFFIAA++
Sbjct:   59 FWPAFVNSISMIIATEIGDKTFFIAAVL 86          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: W7U2H4_9STRA (GDT1 family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2H4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.030e-5
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   24 AGSTSGDMNENAASAG-EGEPRQVGFWTAFANSVAMIVATEIGDKTFFIAAIMA 76
            AG+ +  MN+     G E E    GFW AF NS++MI+ TE+GDKTFFIAA++A
Sbjct:  142 AGAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLA 195          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A7S1GPB2_CYCTE (GDT1 family protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPB2_CYCTE)

HSP 1 Score: 50.4 bits (119), Expect = 2.040e-5
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0
Query:   47 GFWTAFANSVAMIVATEIGDKTFFIAAIM 75
            GFW  F++ VAMI+ATEIGDKTFFIAA+M
Sbjct:   89 GFWKGFSSGVAMIIATEIGDKTFFIAAVM 117          
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Match: A0A4D9CVK3_9STRA (GDT1 family protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.920e-5
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   24 AGSTSGDMNENAASAG-EGEPRQVGFWTAFANSVAMIVATEIGDKTFFIAAIMA 76
            AG+ +  MN+     G E E    GFW AF NS++MI+ TE+GDKTFFIAA++A
Sbjct:   80 AGAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8963.20502.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KTH0_9PHAE4.100e-3794.74GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7FN76_ECTSI7.260e-3590.79GDT1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A0G4ET18_VITBC7.010e-765.85Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
B7FUM2_PHATC2.920e-679.31GDT1 family protein (Fragment) n=2 Tax=Phaeodactyl... [more]
A0A7S3PEH6_9STRA4.200e-676.67GDT1 family protein n=1 Tax=Amphora coffeiformis T... [more]
A0A7S0DLR4_9EUKA4.420e-677.42GDT1 family protein n=1 Tax=Amorphochlora amoebifo... [more]
A0A7S2LN18_9STRA1.990e-575.00GDT1 family protein n=1 Tax=Leptocylindrus danicus... [more]
W7U2H4_9STRA2.030e-551.85GDT1 family protein (Fragment) n=1 Tax=Nannochloro... [more]
A0A7S1GPB2_CYCTE2.040e-575.86GDT1 family protein n=1 Tax=Cyclophora tenuis TaxI... [more]
A0A4D9CVK3_9STRA2.920e-551.85GDT1 family protein n=1 Tax=Nannochloropsis salina... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001727Gdt1 familyPFAMPF01169UPF0016coord: 55..76
e-value: 2.0E-5
score: 24.9
IPR001727Gdt1 familyPROSITEPS01214UPF0016coord: 63..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..76
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.719
NoneNo IPR availableTMHMMTMhelixcoord: 46..65
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8963contigEcto-sp13_S_contig8963:71..4123 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8963.20502.1mRNA_Ecto-sp13_S_contig8963.20502.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8963 71..4292 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8963.20502.1 ID=prot_Ecto-sp13_S_contig8963.20502.1|Name=mRNA_Ecto-sp13_S_contig8963.20502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MDKRVRVAAVLAGLVGMAMAQSGAGSTSGDMNENAASAGEGEPRQVGFWT
AFANSVAMIVATEIGDKTFFIAAIMA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001727Gdt1