prot_Ecto-sp13_S_contig89453.20472.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig89453.20472.1
Unique Nameprot_Ecto-sp13_S_contig89453.20472.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
BLAST of mRNA_Ecto-sp13_S_contig89453.20472.1 vs. uniprot
Match: A0A6H5KCM6_9PHAE (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.190e-27
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0
Query:    1 MERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH 48
            MERMVDHMH+LLRRATGPMSFAVIVPGWDDDGC+SYQNMKNSRFARPH
Sbjct:  125 MERMVDHMHYLLRRATGPMSFAVIVPGWDDDGCLSYQNMKNSRFARPH 172          
BLAST of mRNA_Ecto-sp13_S_contig89453.20472.1 vs. uniprot
Match: D7FSB3_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.220e-26
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0
Query:    1 MERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH 48
            MERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH
Sbjct:  505 MERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH 552          
BLAST of mRNA_Ecto-sp13_S_contig89453.20472.1 vs. uniprot
Match: A0A061R6E1_9CHLO (Phosphorylated CTD-interacting factor 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R6E1_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.730e-9
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    5 VDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFAR 46
            + H+  LL  +T P+SF VIVPGWDDDGC SYQ  K S+F R
Sbjct:  443 IRHIEKLLDASTSPLSFVVIVPGWDDDGCESYQLTKRSKFLR 484          
BLAST of mRNA_Ecto-sp13_S_contig89453.20472.1 vs. uniprot
Match: A0A061REH8_9CHLO (Phosphorylated CTD-interacting factor 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061REH8_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 6.830e-6
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0
Query:    2 ERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH 48
            +RM +H+H LL RATGPMSF V +P W+      +Q ++ S F   H
Sbjct:  402 KRMAEHIHELLERATGPMSFCVFIPAWEST--EGWQELRRSAFLAAH 446          
BLAST of mRNA_Ecto-sp13_S_contig89453.20472.1 vs. uniprot
Match: A0A7S1WY89_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WY89_9CHLO)

HSP 1 Score: 47.0 bits (110), Expect = 2.120e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0
Query:    2 ERMVDHMHH---LLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH 48
            + M D++ H   LL  +  P+SF V+VPGWDDD C SY+   +S F   H
Sbjct:   23 DTMTDNVRHILDLLAASALPLSFVVVVPGWDDDTCESYRLTISSPFLTSH 72          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89453.20472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KCM6_9PHAE8.190e-2795.83PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
D7FSB3_ECTSI2.220e-26100.00PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A061R6E1_9CHLO3.730e-959.52Phosphorylated CTD-interacting factor 1 n=1 Tax=Te... [more]
A0A061REH8_9CHLO6.830e-644.68Phosphorylated CTD-interacting factor 1 (Fragment)... [more]
A0A7S1WY89_9CHLO2.120e-544.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89453contigEcto-sp13_S_contig89453:35..178 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89453.20472.1mRNA_Ecto-sp13_S_contig89453.20472.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig89453 35..208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig89453.20472.1 ID=prot_Ecto-sp13_S_contig89453.20472.1|Name=mRNA_Ecto-sp13_S_contig89453.20472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFARPH
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