prot_Ecto-sp13_S_contig89042.20428.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig89042.20428.1
Unique Nameprot_Ecto-sp13_S_contig89042.20428.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.480e-26
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            GRTTLHTGDFRAAESVCRNPVV SLKGRLDSLYLDTTYCGPRHTFPDQSEV
Sbjct:  113 GRTTLHTGDFRAAESVCRNPVVKSLKGRLDSLYLDTTYCGPRHTFPDQSEV 163          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A7S2WP51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP51_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.880e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSL--KGRLDSLYLDTTYCGPRHTFPDQSEV 51
            GR  LH GDFRA E V  +P + +   +G LD LYLDTTYC P HTFPDQ  V
Sbjct:  116 GRRVLHCGDFRAEECVVESPHLAAALARGPLDELYLDTTYCRPTHTFPDQPAV 168          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A5A9PS24_9TELE (DNA cross-link repair 1A protein SNM1-like protein A n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PS24_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 2.430e-10
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA  S+ R P +  L  R+ SLYLDTTYC P +TFP Q EV
Sbjct:  700 GQTVLHTGDFRAEPSMERYPELQGL--RIQSLYLDTTYCSPEYTFPTQQEV 748          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A5J9TTN2_9POAL (DRMBL domain-containing protein n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TTN2_9POAL)

HSP 1 Score: 62.4 bits (150), Expect = 6.160e-10
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA++S+  +P++   +GR++ LYLDTTYC P++ FP Q EV
Sbjct:  267 GKTYLHTGDFRASKSMQLHPLLQ--RGRVNLLYLDTTYCNPKYKFPPQEEV 315          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A5J9TTI0_9POAL (DRMBL domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TTI0_9POAL)

HSP 1 Score: 62.4 bits (150), Expect = 6.160e-10
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA++S+  +P++   +GR++ LYLDTTYC P++ FP Q EV
Sbjct:  267 GKTYLHTGDFRASKSMQLHPLLQ--RGRVNLLYLDTTYCNPKYKFPPQEEV 315          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A835AI32_9POAL (DRMBL domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835AI32_9POAL)

HSP 1 Score: 62.0 bits (149), Expect = 8.420e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA+ S+  +P++   KGR++ LYLDTTYC P++ FP Q +V
Sbjct:  272 GKTYLHTGDFRASRSMQLHPLLQ--KGRVNLLYLDTTYCNPKYKFPPQEDV 320          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A6P6QG20_CARAU (DNA cross-link repair 1A protein isoform X2 n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6QG20_CARAU)

HSP 1 Score: 62.0 bits (149), Expect = 8.490e-10
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA  S+ R P +  L  R+ +LYLDTTYC P +TFP Q EV
Sbjct:  685 GQTVLHTGDFRADPSMERYPELQGL--RIQTLYLDTTYCSPEYTFPTQQEV 733          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A8M1N609_DANRE (DNA cross-link repair 1A protein n=2 Tax=Danio rerio TaxID=7955 RepID=A0A8M1N609_DANRE)

HSP 1 Score: 62.0 bits (149), Expect = 8.500e-10
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA  S+ R P +  L  R+ +LYLDTTYC P +TFP Q EV
Sbjct:  676 GQTVLHTGDFRADPSMERYPELQGL--RIQTLYLDTTYCSPEYTFPTQQEV 724          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: A0A498LMZ4_LABRO (DNA cross-link repair 1A n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LMZ4_LABRO)

HSP 1 Score: 62.0 bits (149), Expect = 8.500e-10
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA  S+ R P +  LK  + +LYLDTTYC P +TFP Q EV
Sbjct:  683 GQTVLHTGDFRADPSMERYPELQGLK--IQTLYLDTTYCSPEYTFPTQQEV 731          
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Match: UPI001C8970A3 (DNA cross-link repair 1A protein n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8970A3)

HSP 1 Score: 62.0 bits (149), Expect = 8.500e-10
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSEV 51
            G+T LHTGDFRA  S+ R P +  L  R+ +LYLDTTYC P +TFP Q EV
Sbjct:  685 GQTVLHTGDFRADPSMERYPELQGL--RIQTLYLDTTYCSPEYTFPTQQEV 733          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89042.20428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUD2_ECTSI3.480e-2698.04DRMBL domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2WP51_9STRA4.880e-1158.49Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5A9PS24_9TELE2.430e-1060.78DNA cross-link repair 1A protein SNM1-like protein... [more]
A0A5J9TTN2_9POAL6.160e-1054.90DRMBL domain-containing protein n=2 Tax=Eragrostis... [more]
A0A5J9TTI0_9POAL6.160e-1054.90DRMBL domain-containing protein n=1 Tax=Eragrostis... [more]
A0A835AI32_9POAL8.420e-1054.90DRMBL domain-containing protein n=2 Tax=Digitaria ... [more]
A0A6P6QG20_CARAU8.490e-1058.82DNA cross-link repair 1A protein isoform X2 n=1 Ta... [more]
A0A8M1N609_DANRE8.500e-1058.82DNA cross-link repair 1A protein n=2 Tax=Danio rer... [more]
A0A498LMZ4_LABRO8.500e-1058.82DNA cross-link repair 1A n=1 Tax=Labeo rohita TaxI... [more]
UPI001C8970A38.500e-1058.82DNA cross-link repair 1A protein n=1 Tax=Puntigrus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeGENE3D3.60.15.10coord: 1..56
e-value: 1.2E-12
score: 49.8
NoneNo IPR availablePANTHERPTHR23240DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATEDcoord: 3..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89042contigEcto-sp13_S_contig89042:214..384 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89042.20428.1mRNA_Ecto-sp13_S_contig89042.20428.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig89042 214..384 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig89042.20428.1 ID=prot_Ecto-sp13_S_contig89042.20428.1|Name=mRNA_Ecto-sp13_S_contig89042.20428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
GRTTLHTGDFRAAESVCRNPVVTSLKGRLDSLYLDTTYCGPRHTFPDQSE
VSGGMRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036866RibonucZ/Hydroxyglut_hydro