prot_Ecto-sp13_S_contig890.20421.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig890.20421.1
Unique Nameprot_Ecto-sp13_S_contig890.20421.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length289
Homology
BLAST of mRNA_Ecto-sp13_S_contig890.20421.1 vs. uniprot
Match: D8LPG4_ECTSI (EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI)

HSP 1 Score: 510 bits (1314), Expect = 5.900e-180
Identity = 258/289 (89.27%), Postives = 274/289 (94.81%), Query Frame = 0
Query:    1 MNLVAWNSAIQIRKRFSTENVGTSGTLWYQVASPESHKELVGNEKAIRQIDDWFSEALAKPKTSACLFLHGESGTGKSTAVTMIAQKYQFETVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLSTEAEDSSNRDLSRCLFIIISNSKHKHFGSLQDISTTVHFERLHQSEVNKVFNRLAWRVRRHSYVPPMACYLSSISSSGTITQGVQQLQLLYAGNTLPDFLRRPCRKKKKLAGHTNSHRDCISYLWSDIYTDKILEHLVDN 289
            MNLVAWNSAIQIRKR +TENV T+G LWYQVASP SH+ELVGN KAIRQI+DWFSEA A+P+TSACLFLHGESGTGKSTAVTMIAQK++F+TVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLST   D+S R+ SRCLFIIISNSKHK FGSLQDISTT+HFERLHQSE+NKVFNRLAWRVRRHSYVPPMA YLSSISSSGTITQGVQQLQLLYAG+T PDFLRRP RKK+K+AGHTNSHRDCISYLWSDIYTDKILEHLVDN
Sbjct:    1 MNLVAWNSAIQIRKRVATENVCTAGALWYQVASPTSHQELVGNGKAIRQIEDWFSEASAEPETSACLFLHGESGTGKSTAVTMIAQKHEFKTVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLSTG--DTSVRNRSRCLFIIISNSKHKQFGSLQDISTTIHFERLHQSEINKVFNRLAWRVRRHSYVPPMASYLSSISSSGTITQGVQQLQLLYAGDTPPDFLRRPGRKKQKIAGHTNSHRDCISYLWSDIYTDKILEHLVDN 287          
BLAST of mRNA_Ecto-sp13_S_contig890.20421.1 vs. uniprot
Match: A0A836CHP7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHP7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.370e-12
Identity = 45/148 (30.41%), Postives = 79/148 (53.38%), Query Frame = 0
Query:    3 LVAWNSAIQIRKRFSTENVGTSGTLWYQVASPESHKELVGNEKAIRQIDDWFSEALAKPKTSACLFLHGESGTGKSTAVTMIAQKYQFETVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLST 150
            LV W +AI + +   T     +  +W++  +PE+  +L+GN+ +I+ I+ WF     +      L + G  GTGK+TAV ++A +   +   T +D  RT  +L G++  AG    + V+ LD+ + F  E T L  ++K+ R  LS+
Sbjct:   10 LVNWGNAIVVERH--TPKNEEAQKMWFETCAPEASSQLIGNKDSIKAINAWFKGGAVQK----VLVVVGAPGTGKTTAVRLLAHENGVDIHITGSDVPRTQTQLAGIINNAGA--VQQVLFLDEADSFTNEPTGLACIAKMARDRLSS 149          
BLAST of mRNA_Ecto-sp13_S_contig890.20421.1 vs. uniprot
Match: A0A089ZUW4_METFO (Replication factor C large subunit n=4 Tax=Methanobacterium TaxID=2160 RepID=A0A089ZUW4_METFO)

HSP 1 Score: 55.1 bits (131), Expect = 6.730e-5
Identity = 33/128 (25.78%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   27 LWYQVASPESHKELVGNEKAIRQIDDWFSEALAKPKTSACLFLHGESGTGKSTAVTMIAQKYQFETVTTYADRSRTPARLEGVVREAGV------HGPRGVVVLDDFEIFL--EETTSLRVLSKLLRQ 146
            LW +  SP++ K+++GN+KAI +I++W  E+    +   C+ L G  GTGK+T   ++A+++        +D+ R+   +   + EA         G R +++LD+ +     E+   +R ++K++++
Sbjct:    2 LWTEKYSPQTMKDVLGNKKAIEEIENWV-ESWDHGEAQKCILLVGPPGTGKTTLAHLVAREFSDHIELNASDK-RSYDIIMNTIGEASASVSLFGQGGRKLIILDEVDGLHGNEDRGGIRAINKIIKE 127          
BLAST of mRNA_Ecto-sp13_S_contig890.20421.1 vs. uniprot
Match: K2RPG7_METFP (Replication factor C large subunit n=2 Tax=Methanobacterium TaxID=2160 RepID=K2RPG7_METFP)

HSP 1 Score: 54.7 bits (130), Expect = 8.820e-5
Identity = 34/128 (26.56%), Postives = 69/128 (53.91%), Query Frame = 0
Query:   27 LWYQVASPESHKELVGNEKAIRQIDDWFSEALAKPKTSACLFLHGESGTGKSTAVTMIAQKYQFETVTTYADRSRTPARLEGVVREAGV------HGPRGVVVLDDFEIFL--EETTSLRVLSKLLRQ 146
            LW +  SP++ K+++GN+KAI +I++W  E     +   CL L G  GTGK+T   ++A+++        +D+ R+   +   + EA         G R +++LD+ +     E+   +R ++K++++
Sbjct:    2 LWTEKYSPQTMKDVLGNKKAIEEIENWL-ENWDHGEPQKCLLLVGPPGTGKTTLAHLVAREFSDHIELNASDK-RSYDIIMNTIGEASASVSLFGQGGRKLIILDEVDGLHGNEDRGGIRAINKIIKE 127          
BLAST of mRNA_Ecto-sp13_S_contig890.20421.1 vs. uniprot
Match: U6EDT8_9EURY (Replication factor C large subunit n=1 Tax=Methanobacterium sp. MB1 TaxID=1379702 RepID=U6EDT8_9EURY)

HSP 1 Score: 54.7 bits (130), Expect = 8.930e-5
Identity = 34/128 (26.56%), Postives = 69/128 (53.91%), Query Frame = 0
Query:   27 LWYQVASPESHKELVGNEKAIRQIDDWFSEALAKPKTSACLFLHGESGTGKSTAVTMIAQKYQFETVTTYADRSRTPARLEGVVREAGV------HGPRGVVVLDDFEIFL--EETTSLRVLSKLLRQ 146
            LW +  SP++ KE++GN+KAI +I++W  E+    +   CL L G  GTGK+T   ++A+++        +D+ R+   +   + EA         G   +++LD+ +     E+   +R ++K++++
Sbjct:    2 LWTEKYSPKNMKEVLGNKKAIEEIENWV-ESWDHGEAQKCLLLVGPPGTGKTTLAHLVAREFSDHIELNASDK-RSYDIIMNTIGEASASVSLFGQGGHKLIILDEVDGLHGNEDRGGIRAINKIIKE 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig890.20421.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPG4_ECTSI5.900e-18089.27EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI[more]
A0A836CHP7_9STRA7.370e-1230.41P-loop containing nucleoside triphosphate hydrolas... [more]
A0A089ZUW4_METFO6.730e-525.78Replication factor C large subunit n=4 Tax=Methano... [more]
K2RPG7_METFP8.820e-526.56Replication factor C large subunit n=2 Tax=Methano... [more]
U6EDT8_9EURY8.930e-526.56Replication factor C large subunit n=1 Tax=Methano... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 63..192
e-value: 0.0019
score: 27.5
NoneNo IPR availableGENE3D3.40.50.300coord: 30..180
e-value: 2.2E-16
score: 62.0
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 68..173
e-value: 2.6E-8
score: 34.4
IPR004582Checkpoint protein Rad17/Rad24PANTHERPTHR12172CELL CYCLE CHECKPOINT PROTEIN RAD17coord: 22..243
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 27..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig890contigEcto-sp13_S_contig890:19910..20776 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig890.20421.1mRNA_Ecto-sp13_S_contig890.20421.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig890 19910..20776 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig890.20421.1 ID=prot_Ecto-sp13_S_contig890.20421.1|Name=mRNA_Ecto-sp13_S_contig890.20421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
MNLVAWNSAIQIRKRFSTENVGTSGTLWYQVASPESHKELVGNEKAIRQI
DDWFSEALAKPKTSACLFLHGESGTGKSTAVTMIAQKYQFETVTTYADRS
RTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLST
EAEDSSNRDLSRCLFIIISNSKHKHFGSLQDISTTVHFERLHQSEVNKVF
NRLAWRVRRHSYVPPMACYLSSISSSGTITQGVQQLQLLYAGNTLPDFLR
RPCRKKKKLAGHTNSHRDCISYLWSDIYTDKILEHLVDN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR004582Checkpoint_prot_Rad17_Rad24
IPR027417P-loop_NTPase