prot_Ecto-sp13_S_contig8882.20376.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8882.20376.1
Unique Nameprot_Ecto-sp13_S_contig8882.20376.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length177
Homology
BLAST of mRNA_Ecto-sp13_S_contig8882.20376.1 vs. uniprot
Match: D8LP59_ECTSI (N/a n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP59_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.490e-33
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 0
Query:   34 SPEASKFGKGKKVPHQPSRFRKGIGLCTKDPWVTDDRVYEAKREDPACEVPWLINSITTDGLQVKVCLTTLENANPLAKGVQELVKKGFTGQSASPFSVPKHTKGVFKEATRLTKLAKASLSS 156
            S E ++  + +KV    +R+RKGIG+C KDPW TD+ +Y AKR+DP+CE PW++NSI+TDGLQVKVCL TL   NPL KGV+ELVKKG+         V K +KGVFKEA  L    K+ LSS
Sbjct:  292 STEKNQTQRTRKVLRLNNRYRKGIGVCNKDPWFTDEVLYSAKRDDPSCETPWIVNSISTDGLQVKVCLATLAKTNPLPKGVKELVKKGYASIQ-DKLRVSKSSKGVFKEAFPLYGTEKSRLSS 413          
BLAST of mRNA_Ecto-sp13_S_contig8882.20376.1 vs. uniprot
Match: A0A835ZC03_9STRA (OrfB_Zn_ribbon domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC03_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-5
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 0
Query:   65 WVTDDRVYEAKREDPACEVPWLINSITTDGLQVKVCLTTLENANPLAKGVQELVKKGFTGQSASPFSVPKHTKGVFKEATRLTKLAKASLS 155
            W  +  + E   + P    PWL+N+ITTDGLQV V L T +    +  GV EL++KG+T  +   +    HT+G+F  A +++    ++L+
Sbjct:  123 WTIEGDLREYGHKAP----PWLVNNITTDGLQVNVTLAT-KRVETVIPGVAELIEKGYTSIN-DVYKADTHTRGLFGSAEKMSDQVISALN 207          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8882.20376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP59_ECTSI1.490e-3355.28N/a n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835ZC03_9STRA1.080e-534.07OrfB_Zn_ribbon domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8882contigEcto-sp13_S_contig8882:5162..5692 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8882.20376.1mRNA_Ecto-sp13_S_contig8882.20376.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8882 2034..6490 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8882.20376.1 ID=prot_Ecto-sp13_S_contig8882.20376.1|Name=mRNA_Ecto-sp13_S_contig8882.20376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MDRRGQECWADEEVVVDRDFRLSHQAKGPKTTWSPEASKFGKGKKVPHQP
SRFRKGIGLCTKDPWVTDDRVYEAKREDPACEVPWLINSITTDGLQVKVC
LTTLENANPLAKGVQELVKKGFTGQSASPFSVPKHTKGVFKEATRLTKLA
KASLSSIAAVFMRIPEFSQINGANHM*
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