prot_Ecto-sp13_S_contig8881.20374.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8881.20374.1
Unique Nameprot_Ecto-sp13_S_contig8881.20374.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length214
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8881.20374.1 vs. uniprot
Match: D7FQX7_ECTSI (FeThRed_A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX7_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 5.510e-144
Identity = 209/214 (97.66%), Postives = 211/214 (98.60%), Query Frame = 0 
Query:    1 MILPASFVGATLVFFSSHAEAFITNGRAPLVQACNRLHGRAATPVPRAPRSRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPITVVAKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRKATPEEIEKNQQMIDAQNALDAIEQEKRDAARA-KEAEEAAAKAAE 213
            MILPASFVGATLVFFSSHAEAFITNGRAPLVQAC RLHGRAATPVPRAPRSRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPITV+AKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRKATPEEIEKNQQ+IDAQNALDAIEQ KRDAARA KEAEEAAAKAAE
Sbjct:    1 MILPASFVGATLVFFSSHAEAFITNGRAPLVQACYRLHGRAATPVPRAPRSRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPITVIAKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRKATPEEIEKNQQLIDAQNALDAIEQAKRDAARAAKEAEEAAAKAAE 214
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BLAST of mRNA_Ecto-sp13_S_contig8881.20374.1 vs. uniprot
Match: A0A4D9D7A8_9STRA (FeThRed_A domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7A8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.410e-9
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 0 
Query:   89 NPDGLKEGDPITVVAKGLTFYHV-RGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRK 169
            NPDG+KEG+ + ++A   TFY + +  K+G +P+G  G ++ L   ++   G   +A+RPVV  FT P KF  H EF EV++
Sbjct:  135 NPDGIKEGELVEIIADS-TFYSIPKAPKEGVNPKGFQGTVTMLKFTARN--GVTCSANRPVVVKFTDPYKFMGHFEFREVKR 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8881.20374.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQX7_ECTSI5.510e-14497.66FeThRed_A domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9D7A8_9STRA2.410e-940.24FeThRed_A domain-containing protein n=2 Tax=Monodo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 174..213
NoneNo IPR availableGENE3D2.30.30.50coord: 93..170
e-value: 1.8E-5
score: 26.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.538
IPR004207Ferredoxin thioredoxin reductase, alpha chainPFAMPF02941FeThRed_Acoord: 102..163
e-value: 1.7E-6
score: 28.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8881contigEcto-sp13_S_contig8881:1484..4483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8881.20374.1mRNA_Ecto-sp13_S_contig8881.20374.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8881 1484..5768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8881.20374.1 ID=prot_Ecto-sp13_S_contig8881.20374.1|Name=mRNA_Ecto-sp13_S_contig8881.20374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MILPASFVGATLVFFSSHAEAFITNGRAPLVQACNRLHGRAATPVPRAPR
SRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPIT
VVAKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVC
TFTHPKKFKAHLEFGEVRKATPEEIEKNQQMIDAQNALDAIEQEKRDAAR
AKEAEEAAAKAAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004207Fd_thioredoxin_Rdtase_alpha