prot_Ecto-sp13_S_contig8775.20245.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8775.20245.1
Unique Nameprot_Ecto-sp13_S_contig8775.20245.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length449
Homology
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 608 bits (1569), Expect = 2.550e-215
Identity = 347/421 (82.42%), Postives = 361/421 (85.75%), Query Frame = 0
Query:    1 MSAAVSNAPASAASAAGT-IPTADVEAPTLDPTRDQLRPGGHATSPGDAAAVELATDLDAGDAATPAGGGAQIYTTPRALEGSSLPLLAGLGAIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGCKNNFTKEAREELITYFVFGTGPEELPTEAKAGXXXXXXXXKEGSRQKKHDRGNCASSDELQVSRTSSRRWRRERQRSSDGDDGTVA-GAGVSGGGAARNGRIDANNADTGGSLSANTPVPSTGPCSPAPLEEEVIDGNAATAVTADDAAVAASPGHATAAVAATATLAGPELPGANGEDAAEEQASAAAKPATEEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPHDRSSSISTAG 419
            MSAAVSNAPASAASAA T + T DVEAP LDPTRDQLRPGGH T+ GDAAAVELAT LDAGDAA PAGG AQ+YTTPRALEGSSLP LAGL  IISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREG  N+FTKEAR+ELITYFVFG GPE LPTEA AG        K+G+R K+ +RGN AS DELQVSRTSSRRWRR               GAGVS GGAARNGRIDANNADTGGSLSANTP+PSTGPCSPAPLEEEV+DG+AATA TA+DAAV ASPGHATAAV A AT  GPELP A GEDAAEEQASAAAK A E DDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLA LPCRHVYHAQCIDEWLDRAK+PSCPLCKTDLRHATPP DRS SISTAG
Sbjct:    1 MSAAVSNAPASAASAASTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGG-AQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAG----KKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAE-DDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAG 415          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 4.410e-122
Identity = 236/419 (56.32%), Postives = 250/419 (59.67%), Query Frame = 0
Query:    1 MSAAVSNAPASAASAAGTIPTADVEAPTLDPTRDQLRPGGHATSPGDAAAVELATDLDAGDAATPAGGGAQIYTTPRALEGSSLPLLAGLGAIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGCKNNFTKEAREELITYFVFGTGPEELPTEAKAGXXXXXXXXKEGSRQKKHDRGNCASSDELQVSRTSSRRWRRERQRSSDGDDGTVAGAGVSGGGAARNGRIDANNADTGGSLSANTPVPSTGPCSPAPLEEEVIDGNAATAVTADDAAVAASPGHATAAVAATATLAGPELPGANGEDAAEEQASAAAKPATEEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPHDRSSSISTAG 419
            MSAAVS+APA              EAPTLDPTRDQLRPGGHAT+ GDAAAVELATDLDAGDAA PAG   Q   TPR  EGSSLPLL+G+ A++S IFILGDL+NKRMLHP S  VFLLSVSYCVAMLRRQWASTGGGTREGC N+FTKEAREELITYFVFG GPE LPTEA  G XXXXXXXK+G+R K+ +RGN AS DELQ+ R                                                                                                     L+  E P                K A EEDDP RA  DSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPP D   SISTAG
Sbjct:   20 MSAAVSHAPAXXXXXXXXXXXXXXEAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGS-EQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEA--GAXXXXXXXKKGNRPKQQERGNGASGDELQLLRL---------------------------------------------------------------------------------------------------VLSYREQP-------------VKVKAAAEEDDPARA-CDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAG 322          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 6.040e-104
Identity = 189/241 (78.42%), Postives = 193/241 (80.08%), Query Frame = 0
Query:  210 SRRWRRERQR-SSDGDDGTVAGAGVSGGGAARNGRIDANNADTGGSLSANTPVPSTGPCSPAPLE-EEVIDGNAATAVTADDAAVAASPGHATAAVAATATLAGPELPGANGEDAAEEQASAAAKPATEEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPHDRSSSISTAGRAGAGVNAARVGEGSGGGEGVEFTGDNAV 448
            SRRWRRERQR SSD             GGAARNGRIDANNADT GSLSAN P PSTGPCSPAPLE EEV+ G+AATAVTA DAA+AASP HATAAV ATAT A PELPGANG DAAEE            DDP RA  D+GEWSTGQACIVCF DYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPP DRS SIST G AG  VNAARVG GSGGGEGVEFTGDNAV
Sbjct:   13 SRRWRRERQRGSSDXXXXXXXXXXXXXGGAARNGRIDANNADTRGSLSANAPAPSTGPCSPAPLEAEEVVHGDAATAVTAADAALAASPRHATAAVTATATPADPELPGANG-DAAEEXXXXXXXXXXXXDDPARA-CDTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSGGGEGVEFTGDNAV 251          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 3.790e-65
Identity = 126/144 (87.50%), Postives = 129/144 (89.58%), Query Frame = 0
Query:    1 MSAAVSNAPASAASAAGTIPTA-DVEAPTLDPTRDQLRPGGHATSPGDAAAVELATDLDAGDAATPAGGGAQIYTTPRALEGSSLPLLAGLGAIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTG--GGTRE 141
            MSAAVSNAPASAASAA T+ TA DVEAPTL PTRDQLRPGGHAT PGDAAAVELATDLDAGDAA PAGG AQ+ TTPR LEGSSLP LAGL AIISTIFI+GDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTG  GG  E
Sbjct:    1 MSAAVSNAPASAASAAATMATAGDVEAPTLYPTRDQLRPGGHATMPGDAAAVELATDLDAGDAAAPAGG-AQLNTTPRPLEGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGESGGAME 143          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.980e-16
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0
Query:  350 WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPHDRSSSISTA 418
            WS  ++CI+CFG+Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L   + P + S +  TA
Sbjct:   72 WSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETA 140          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.970e-15
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0
Query:  350 WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPHDRS 412
            WS+G++CI+CFG+Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L   + P + S
Sbjct:  452 WSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGS 514          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.230e-14
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 0
Query:  348 GEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDL 402
            GE STG +CIVCFGDY  G+ L RL C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  244 GEGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.430e-13
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0
Query:  348 GEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDL 402
            GE ST  +CIVCFGDY  G+ L RL C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  251 GEGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: A0A1D1XYA5_9ARAE (E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XYA5_9ARAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.030e-10
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 0
Query:  343 AQSDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLR 403
            A +D GE  T   C +C  D+E GD L  LPC+H YH +CID WL   K  SCPLCKTD R
Sbjct:  125 AVTDDGEVDT---CAICIEDFENGDELRLLPCKHWYHVECIDPWLT-TKSSSCPLCKTDCR 181          
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Match: A0A813E405_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E405_POLGL)

HSP 1 Score: 68.6 bits (166), Expect = 1.730e-9
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:  356 CIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHA 405
            C VC  DYEPGDR+ RLPC H  H++C++ WL R  +P CP+C+T L+ A
Sbjct:  182 CRVCLVDYEPGDRVVRLPCMHFAHSRCMETWLVR--VPRCPVCQTSLQEA 229          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8775.20245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ1_ECTSI2.550e-21582.42RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI4.410e-12256.32RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE6.040e-10478.42RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE3.790e-6587.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUH7_9PHAE5.980e-1652.17RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI8.970e-1555.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI1.230e-1465.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE1.430e-1363.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A1D1XYA5_9ARAE8.030e-1054.10E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 T... [more]
A0A813E405_POLGL1.730e-954.00Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 356..398
e-value: 4.3E-6
score: 36.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 355..399
e-value: 1.1E-10
score: 41.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 356..399
score: 12.15
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 317..405
e-value: 1.2E-17
score: 65.3
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 297..408
NoneNo IPR availablePANTHERPTHR22765:SF209PROTEIN SAN1coord: 297..408
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..128
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..83
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..448
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..103
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 349..406

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8775contigEcto-sp13_S_contig8775:2043..5429 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8775.20245.1mRNA_Ecto-sp13_S_contig8775.20245.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8775 1481..6679 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8775.20245.1 ID=prot_Ecto-sp13_S_contig8775.20245.1|Name=mRNA_Ecto-sp13_S_contig8775.20245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=449bp
MSAAVSNAPASAASAAGTIPTADVEAPTLDPTRDQLRPGGHATSPGDAAA
VELATDLDAGDAATPAGGGAQIYTTPRALEGSSLPLLAGLGAIISTIFIL
GDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGCKNNFTKE
AREELITYFVFGTGPEELPTEAKAGAGAGAGAGKEGSRQKKHDRGNCASS
DELQVSRTSSRRWRRERQRSSDGDDGTVAGAGVSGGGAARNGRIDANNAD
TGGSLSANTPVPSTGPCSPAPLEEEVIDGNAATAVTADDAAVAASPGHAT
AAVAATATLAGPELPGANGEDAAEEQASAAAKPATEEDDPTRAQSDSGEW
STGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKT
DLRHATPPHDRSSSISTAGRAGAGVNAARVGEGSGGGEGVEFTGDNAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD