prot_Ecto-sp13_S_contig8755.20228.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8755.20228.1
Unique Nameprot_Ecto-sp13_S_contig8755.20228.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length411
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 4.130e-75
Identity = 157/219 (71.69%), Postives = 158/219 (72.15%), Query Frame = 0 
Query:    1 SNQTAAGQEDGVVAGDPVVEYVGDASDDDTIPGEASDAVAGGSGGTAXXXXXXXAGDGRVSPTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----RLGEARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNARE 215
            S +TAAGQE  VVAGDPVVEYVGDASDD TI GEASDAVAGGSGGTA  XXXXX     VS TEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQG                                                RLGEARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNARE
Sbjct:  578 SKETAAGQEQDVVAGDPVVEYVGDASDDGTILGEASDAVAGGSGGTAAEXXXXXXXXXGVSRTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKLEASEGNRDAARKARPTIFARGIRESSEDVSFLCHSLGSLELAADRLGEARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNARE 796
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.750e-66
Identity = 183/215 (85.12%), Postives = 188/215 (87.44%), Query Frame = 0 
Query:    1 SNQTAAGQEDGVVAGDPVVEYVGDASDDDTIPGEASDAVAGGSGGTAXXXXXXXAGDGRVSPTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGEARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNARE 215
            S +TAAG + GVVAGDPVVEYVGDASDD TI GEASDAVAGGSGGTA     XX  +G VS TEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHAR+VYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             ERYP+GSQLLLGAGLAIAKMGEPDNARE
Sbjct:  499 SKKTAAGPKYGVVAGDPVVEYVGDASDDGTILGEASDAVAGGSGGTADENDGXXXXEGGVSRTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARNVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYPSGSQLLLGAGLAIAKMGEPDNARE 713
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: A0A7S2DH37_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH37_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.070e-14
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:   64 EEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQG 130
            E+++G     EARRLFELGI ADP+HGPLYNAYG+MEA+  N + AR V +RGIAA+C+   HVW G
Sbjct:  312 EKQKGKIRVVEARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAKCTDMAHVWHG 378
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: A0A835Z4V8_9STRA (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.810e-13
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 0 
Query:   75 ARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQG 130
            ARRLFELGI ADP HGPLYNAYG+ EA+ G+V+ AR+V++RG+AA C+    VW G
Sbjct:  445 ARRLFELGIRADPKHGPLYNAYGATEARWGDVDAARAVFRRGVAAHCTDMASVWHG 500
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: A0A6S8QV48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QV48_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.210e-12
Identity = 67/155 (43.23%), Postives = 85/155 (54.84%), Query Frame = 0 
Query:   72 YEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------RLGEARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNARE 215
            Y +  RLF+  +L DP HGP+YNAYG+ME K+GNVE AR +Y+ G+ A C     V   XXXXXXXXXXXXXXXXXX                                     R  EA+A+F  G++++ N SQLLLGA L+  K+G  D AR+
Sbjct:  557 YTKIARLFQEALLLDPRHGPVYNAYGNMELKMGNVEEARRIYQNGVYANCRDLASVXXXXXXXXXXXXXXXXXXXXXKKGLREVRIHDSGMDSNRRKRAVFLAHTLGMLELNCNRAAEAKAIFEIGIDQHGNSSQLLLGAALSEVKLGNEDAARK 711
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: W7TSL7_9STRA (PsbB mRNA maturation factor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSL7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.580e-10
Identity = 45/134 (33.58%), Postives = 60/134 (44.78%), Query Frame = 0 
Query:   75 ARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RLGEARAVFLAGVERYPNGSQLLLGAGLAIAK 206
            AR+LF LG+ ADP+HGPLYNAYG ME K+GN+  A+ V++ G+ A C     V  G                                              ++ +A  VF    ++YP  SQLL+GAGLA  K
Sbjct:  511 ARKLFMLGMAADPSHGPLYNAYGRMEEKIGNLTGAQEVFRMGVEAHCPDMPSVLNGWAMLSLKQRNYAQARSLLQRGLSENKLGKNVGFLYHSLGMLEMKLGKIEDAWRVFKEATDKYPRNSQLLVGAGLAAEK 644
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: B7G4B1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4B1_PHATC)

HSP 1 Score: 72.4 bits (176), Expect = 5.910e-10
Identity = 75/158 (47.47%), Postives = 92/158 (58.23%), Query Frame = 0 
Query:   68 GPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-LG----------EARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNAR 214
            G  ++   + LFE  IL DP HGP YN+YG++E + GN+  AR++++RGI A CS    V   XXXXXXXXXXXXXXXXXXXXXXXXXX                    LG          +A ++F+ GV RY N SQLLLGA L   K+G   NAR
Sbjct:  393 GEANFTRVKALFEEAILLDPRHGPAYNSYGNLELRQGNIRTARNIFERGILAHCSDVASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDAGMDSPHRERALFLSHTLGMLELNSNRPIDALSIFIDGVNRYGNSSQLLLGAALCEVKLGNEVNAR 550
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: A0A7S3LJ22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ22_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.360e-8
Identity = 47/158 (29.75%), Postives = 62/158 (39.24%), Query Frame = 0 
Query:   68 GPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-LG----------EARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNAR 214
            G  ++    RLFE  ++ DP HGP YN+YG+     GNV  AR +++RG+   C+ A  V+ G                                              LG          EA  +F  G+ RY N SQLLLGA L  AK+G    AR
Sbjct:  204 GTMNFTMVERLFEEALMLDPRHGPAYNSYGNAHLNRGNVIDARGIFERGVKNDCTDAASVYHGYAKLELSLGNVKRAKLLLKKGLAKARRQDMGTDSPHRERASFLTHTLGMLELNSAEPKEALTIFTDGINRYGNSSQLLLGAALCEAKLGNEAKAR 361
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BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Match: A0A1E7ERC4_9STRA (TPR-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERC4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.960e-5
Identity = 62/152 (40.79%), Postives = 82/152 (53.95%), Query Frame = 0 
Query:   76 RRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RLG----------EARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNAR 214
            R LFE  ++ DP +GP YNAYG+ E + GN++ AR +++RG A  CS +  +   XXXXXXXXXXXXXXXXXXXX                            LG          +A  +F+ G++R  N SQLLLGA L   +MG+ + AR
Sbjct:  363 RGLFEEALMLDPRNGPAYNAYGNAELRRGNLQEARIIFERGTAMNCSDSASLXXXXXXXXXXXXXXXXXXXXXXXGLDTVRRNEDNVSSDTPNRDRAAFLSHTLGMLELNSNRPLDAFGIFMDGLDRCGNSSQLLLGAALCEMRMGKDEGAR 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8755.20228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L0Y9_9PHAE4.130e-7571.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I2_ECTSI1.750e-6685.12PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A7S2DH37_9STRA1.070e-1461.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z4V8_9STRA2.810e-1364.29PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A6S8QV48_9STRA5.210e-1243.23Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7TSL7_9STRA3.580e-1033.58PsbB mRNA maturation factor n=2 Tax=Monodopsidacea... [more]
B7G4B1_PHATC5.910e-1047.47Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3LJ22_9STRA2.360e-829.75Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7ERC4_9STRA1.960e-540.79TPR-like protein n=1 Tax=Fragilariopsis cylindrus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 378..410
e-value: 0.0026
score: 27.0
coord: 276..308
e-value: 0.0031
score: 26.7
coord: 344..376
e-value: 5.8
score: 15.9
coord: 242..274
e-value: 1.7E-6
score: 37.6
coord: 208..240
e-value: 0.079
score: 22.1
coord: 104..137
e-value: 4.2
score: 16.3
coord: 70..102
e-value: 18.0
score: 13.5
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 364..397
e-value: 33.0
score: 10.4
coord: 194..227
e-value: 0.2
score: 20.7
coord: 296..329
e-value: 69.0
score: 7.6
coord: 228..261
e-value: 42.0
score: 9.5
coord: 262..295
e-value: 78.0
score: 7.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 228..261
score: 8.142
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 296..329
score: 5.723
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 262..295
score: 6.107
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 194..227
score: 10.296
NoneNo IPR availablePFAMPF13428TPR_14coord: 367..406
e-value: 5.8E-5
score: 23.6
coord: 264..304
e-value: 1.5E-5
score: 25.5
NoneNo IPR availablePFAMPF13432TPR_16coord: 166..227
e-value: 4.0E-4
score: 21.0
NoneNo IPR availablePANTHERPTHR44917FAMILY NOT NAMEDcoord: 205..409
coord: 71..195
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 70..200
e-value: 2.8E-9
score: 38.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 291..411
e-value: 1.5E-20
score: 75.6
coord: 201..290
e-value: 3.3E-22
score: 81.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 290..407
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 158..330
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 70..147
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 72..411
score: 34.996

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8755contigEcto-sp13_S_contig8755:308..5946 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8755.20228.1mRNA_Ecto-sp13_S_contig8755.20228.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8755 308..5946 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8755.20228.1 ID=prot_Ecto-sp13_S_contig8755.20228.1|Name=mRNA_Ecto-sp13_S_contig8755.20228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
SNQTAAGQEDGVVAGDPVVEYVGDASDDDTIPGEASDAVAGGSGGTAAEN
DGGAAGDGRVSPTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYGSME
AKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKLEAAEGNRDAARKASST
GIRESSEDVSFLCHSLGSLELAADRLGEARAVFLAGVERYPNGSQLLLGA
GLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAGNFKVARSL
WERGLKANPTHGPLWQAYAVMEEKVGEPERARKLFEAGLERCPDHVQLHQ
AWAVMEGMLGDLKRARELVVEGLRLDPHHGALWTVYSIVERQGGSDVKAR
KVLELGVRACPDHGPLHRCWAQMEHQLGNTAEARRRFERGLEACPTYARL
YYAYADMEAAM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom