prot_Ecto-sp13_S_contig8739.20204.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8739.20204.1
Unique Nameprot_Ecto-sp13_S_contig8739.20204.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length50
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8739.20204.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.900e-16
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0 
Query:    1 NRHVFEIRARSAYLVMLLGVCTMAALAMNMVGQSVVTFNALPNLYTFSM 49
            NRHVFEIRARSA LVMLLG  TM ALAMNMVGQSVV FNALPNLYTF M
Sbjct:   84 NRHVFEIRARSACLVMLLGASTMTALAMNMVGQSVVIFNALPNLYTFFM 132
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BLAST of mRNA_Ecto-sp13_S_contig8739.20204.1 vs. uniprot
Match: A0A6H5KHV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.910e-13
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 
Query:   11 SAYLVMLLGVCTMAALAMNMVGQSVVTFNALPNLYTFSMA 50
            SAYLVMLLG CTMAALA+NMVGQSVV FNA PNLYTFSMA
Sbjct:   63 SAYLVMLLGACTMAALAINMVGQSVVIFNARPNLYTFSMA 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8739.20204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEK8_ECTSI5.900e-1687.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHV8_9PHAE7.910e-1390.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8739contigEcto-sp13_S_contig8739:3..1386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8739.20204.1mRNA_Ecto-sp13_S_contig8739.20204.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8739 3..1387 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8739.20204.1 ID=prot_Ecto-sp13_S_contig8739.20204.1|Name=mRNA_Ecto-sp13_S_contig8739.20204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
NRHVFEIRARSAYLVMLLGVCTMAALAMNMVGQSVVTFNALPNLYTFSMA
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