prot_Ecto-sp13_S_contig8666.20112.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8666.20112.1
Unique Nameprot_Ecto-sp13_S_contig8666.20112.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: D7FXF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.890e-38
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            +VFRWKAGT GRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ
Sbjct:   55 TVFRWKAGTTGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 123          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A6H5KAH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH3_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.450e-37
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    7 AGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            AGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ
Sbjct:    2 AGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 64          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A7S3YHN5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHN5_HETAK)

HSP 1 Score: 107 bits (268), Expect = 1.240e-26
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREF 66
            + FRW+ GT  R KSTQLCQTC+KLKN CQ CVLDLQYGLPVEVRDK+LA ED++ VP SDANRE+
Sbjct:   55 TAFRWRPGTGARFKSTQLCQTCSKLKNVCQVCVLDLQYGLPVEVRDKYLAVEDQVVVPESDANREW 120          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A024U5G3_9STRA (C3H1-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5G3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.230e-24
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            +VFRWK G   R K T++CQTCAKLKN CQTCVLDLQY LPV+VRD FLAE +R  VP S+ANRE+  Q
Sbjct:   58 TVFRWKPGKKARYKKTEICQTCAKLKNVCQTCVLDLQYHLPVQVRDAFLAESERQIVPESEANREWFAQ 126          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: W4GZE5_9STRA (C3H1-type domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZE5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.260e-24
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            +VFRWK G   R K T++CQTCAKLKN CQTCVLDLQY LPV+VRD FLAE +R  VP S+ANRE+  Q
Sbjct:   58 TVFRWKPGKKARYKKTEICQTCAKLKNVCQTCVLDLQYHLPVQVRDAFLAESERQIVPESEANREWFAQ 126          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A485L8T4_9STRA (Aste57867_17939 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8T4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.360e-24
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            +VFRWK G   R K T++CQTCAK+KN CQTCVLDLQY LPV+VRD FLAE +R  +P S+ANRE+  Q
Sbjct:   58 TVFRWKPGKKARYKKTEICQTCAKMKNVCQTCVLDLQYHLPVQVRDAFLAESERQSIPESEANREWFAQ 126          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A067BSD5_SAPPC (C3H1-type domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BSD5_SAPPC)

HSP 1 Score: 100 bits (249), Expect = 2.090e-24
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            +VFRWK G   R K T++CQTCAK+KN CQTCVLDLQY LPV+VRD FL+E++R  VP S+ANRE+  Q
Sbjct:   58 TVFRWKPGKKARYKKTEICQTCAKIKNVCQTCVLDLQYHLPVQVRDAFLSEQERQNVPLSEANREYHAQ 126          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A8K1CH38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH38_PYTOL)

HSP 1 Score: 100 bits (250), Expect = 2.460e-24
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLA---EEDRLEVPGSDANREFMTQ 69
            +VFRWK G  GR K T++CQTCA++KN CQTCVLDLQY LPV+VRD FLA   E D + VP SDANRE+  Q
Sbjct:   55 TVFRWKPGKRGRYKKTEICQTCARMKNVCQTCVLDLQYNLPVQVRDSFLATEEERDHVNVPESDANREWFAQ 126          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: A0A6G0XBK0_9STRA (C3H1-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBK0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.490e-24
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMTQ 69
            +VFRWK G   R K T++CQTCAKLKN CQTCVLDLQY LPV+VRD FLA  +R +VP S+ANRE+  Q
Sbjct:   58 TVFRWKPGKKARYKKTEICQTCAKLKNVCQTCVLDLQYHLPVQVRDAFLAVSERQDVPESEANREWFAQ 126          
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Match: I7MHH9_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MHH9_TETTS)

HSP 1 Score: 102 bits (253), Expect = 2.930e-24
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0
Query:    1 SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEEDRLEVPGSDANREFMT 68
            +VFRWKAGT GR K T++CQTCAKLKN CQTC+ DLQYGLPVEVRDKFLAE+  + +P   +N+++ T
Sbjct:   56 TVFRWKAGTKGRFKKTEICQTCAKLKNVCQTCIFDLQYGLPVEVRDKFLAEQ-AVHMPTQQSNKDYFT 122          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8666.20112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF1_ECTSI5.890e-3897.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KAH3_9PHAE1.450e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YHN5_HETAK1.240e-2674.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024U5G3_9STRA1.230e-2468.12C3H1-type domain-containing protein n=2 Tax=Aphano... [more]
W4GZE5_9STRA1.260e-2468.12C3H1-type domain-containing protein n=5 Tax=Aphano... [more]
A0A485L8T4_9STRA1.360e-2465.22Aste57867_17939 protein n=1 Tax=Aphanomyces stella... [more]
A0A067BSD5_SAPPC2.090e-2465.22C3H1-type domain-containing protein n=3 Tax=Saprol... [more]
A0A8K1CH38_PYTOL2.460e-2465.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XBK0_9STRA2.490e-2466.67C3H1-type domain-containing protein n=1 Tax=Aphano... [more]
I7MHH9_TETTS2.930e-2466.18Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039171Pre-mRNA-splicing factor Cwc2/Slt11PANTHERPTHR14089CELL CYCLE CONTROL PROTEINcoord: 2..69
NoneNo IPR availablePANTHERPTHR14089:SF6PRE-MRNA-SPLICING FACTOR RBM22coord: 2..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8666contigEcto-sp13_S_contig8666:316..1012 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8666.20112.1mRNA_Ecto-sp13_S_contig8666.20112.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8666 316..1012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8666.20112.1 ID=prot_Ecto-sp13_S_contig8666.20112.1|Name=mRNA_Ecto-sp13_S_contig8666.20112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
SVFRWKAGTAGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLA
EEDRLEVPGSDANREFMTQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039171Cwc2/Slt11