prot_Ecto-sp13_S_contig8480.19872.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig8480.19872.1
Unique Name	prot_Ecto-sp13_S_contig8480.19872.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	131

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 4.740e-87
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   67 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.220e-84
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:  263 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 1.370e-82
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MLASLGV+VAEQYHP FMGPDYIGPAVDHFQEISA++PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   91 MLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.640e-77
Identity = 116/129 (89.92%), Postives = 122/129 (94.57%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 129
            MLASLG++VAE+YHP FMG D+IGPA+ HFQEISA+FPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:   91 MLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.330e-74
Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MLA++GVIVAEQYHP FMGPDYIGPAVDHFQEISA+FPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:   92 MLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.560e-71
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 129
            MLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   46 MLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.810e-70
Identity = 111/131 (84.73%), Postives = 112/131 (85.50%), Query Frame = 0

Query:   18 MGPDYIGPAVDHFQEISARFPE------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MGPDYIGPAVDHFQEISA+FPE                  FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MGPDYIGPAVDHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.800e-68
Identity = 100/130 (76.92%), Postives = 115/130 (88.46%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:   89 MLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.490e-59
Identity = 92/112 (82.14%), Postives = 99/112 (88.39%), Query Frame = 0

Query:   18 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 129
            MGPDYIGPAVDHFQEISARFPEFWAFSLLGM  IEYNTI  A+  PS VTGEGGL++DYS GDLGFDPLNLKP D+AAL+ M+TKELNNGRLAMIGIAGML QELVN  +IL
Sbjct:    1 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112

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BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 6.910e-58
Identity = 101/130 (77.69%), Postives = 101/130 (77.69%), Query Frame = 0

Query:    1 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 130
            MLASLGVIVAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   91 MLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8480.19872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7S5_ECTSI	4.740e-87	97.69	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	1.220e-84	98.46	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q6_ECTSI	1.370e-82	92.31	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.640e-77	89.92	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	2.330e-74	84.62	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	2.560e-71	81.40	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JVY1_9PHAE	1.810e-70	84.73	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7S0_ECTSI	1.800e-68	76.92	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5L7D2_9PHAE	1.490e-59	82.14	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K8D0_9PHAE	6.910e-58	77.69	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 1..130 e-value: 1.4E-22 score: 82.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 1..121 e-value: 2.2E-22 score: 80.3
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 1..124
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 1..129
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8480	contig	Ecto-sp13_S_contig8480:300..1434 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8480.19872.1	mRNA_Ecto-sp13_S_contig8480.19872.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig8480 195..3988 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig8480.19872.1 ID=prot_Ecto-sp13_S_contig8480.19872.1|Name=mRNA_Ecto-sp13_S_contig8480.19872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMAF
IEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMK
TKELNNGRLAMIGIAGMLAQELVNPADILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln