prot_Ecto-sp13_S_contig8201.19556.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8201.19556.1
Unique Nameprot_Ecto-sp13_S_contig8201.19556.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length410
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8201.19556.1 vs. uniprot
Match: D7FTT1_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTT1_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 7.800e-145
Identity = 330/411 (80.29%), Postives = 337/411 (82.00%), Query Frame = 0 
Query:    1 MKAAVSLAGAVLLSRAPAAAAVGEQPTIVGSRAPPMAWSWTKAAPREGRRRIRNADLHRDRPPEPLSTTNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEGGEAAGGEEGGGKGAEQQAADXXXRGKGRXXXXXXXXXXXXRRAEGWDSASSRAGGDSAKDXXXXAGTGNSXXXXXXXDA-GERSAGGAIQGQMERLRLALQQQQTGGNGRESGGXXXXXXXXXARDSHRDTSNNKSGHRSSMASKNPHLSVSEGLLVDRGANSNVETQSSGGSGADSAFDDDGYSTESAAGEDEKTWKEGGEDLDSDEEVSFFESGGGTEGEXXXXXXXXXXXXXXXXXXRARSEVALLREMETVHANQQGMGRPGEAVVIPPLGQHTRTVVTQAMPARFVEEVGASLASAMALATARMLV 410
            MKAAVSLAGAVLLSRAPAAA VGE+PTIVGSRAPPMA SWTKAAPREGRRRIRNADLHRDRPPEPLS+TNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEGGEAAGGE GG          XXX     XXXXXXXXXXXX RAEGWDSASSRAGG+SAKD    AGTG  XXXXXXX   GERSAGGAI GQMERLRLALQQQ TGGNGRES  XXXXXXXXXARDSHRDTSN  SGHRSSMASKNP LSVS GLLVDRGANSNVETQSSGGSGA SA+DD G+STE AA                                XXXXXXX   XXXXXXXXRARSEVALLREMETVHANQQGMGRPGEAVVIPPLGQHTRTVVTQAMPARFVEEVGASLASAMALATAR+L+
Sbjct:    1 MKAAVSLAGAVLLSRAPAAAVVGEKPTIVGSRAPPMASSWTKAAPREGRRRIRNADLHRDRPPEPLSSTNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEGGEAAGGE-GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEGWDSASSRAGGNSAKDGGAAAGTGXXXXXXXXXXXXGERSAGGAIHGQMERLRLALQQQ-TGGNGRESXXXXXXXXXXXARDSHRDTSNTNSGHRSSMASKNPRLSVSGGLLVDRGANSNVETQSSGGSGAGSAYDDGGHSTEPAAXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLARXXXXXXXXRARSEVALLREMETVHANQQGMGRPGEAVVIPPLGQHTRTVVTQAMPARFVEEVGASLASAMALATARVLI 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8201.19556.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTT1_ECTSI7.800e-14580.29AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 322..342
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..410
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.584

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8201contigEcto-sp13_S_contig8201:180..6973 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8201.19556.1mRNA_Ecto-sp13_S_contig8201.19556.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8201 180..6973 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8201.19556.1 ID=prot_Ecto-sp13_S_contig8201.19556.1|Name=mRNA_Ecto-sp13_S_contig8201.19556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=410bp
MKAAVSLAGAVLLSRAPAAAAVGEQPTIVGSRAPPMAWSWTKAAPREGRR
RIRNADLHRDRPPEPLSTTNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEG
GEAAGGEEGGGKGAEQQAADGGGRGKGRRGRGGGDHGAAGRRAEGWDSAS
SRAGGDSAKDGAAAAGTGNSGGNGAGTDAGERSAGGAIQGQMERLRLALQ
QQQTGGNGRESGGEGGASGSGGARDSHRDTSNNKSGHRSSMASKNPHLSV
SEGLLVDRGANSNVETQSSGGSGADSAFDDDGYSTESAAGEDEKTWKEGG
EDLDSDEEVSFFESGGGTEGEDNEEEEELVRAKAAAAAARARSEVALLRE
METVHANQQGMGRPGEAVVIPPLGQHTRTVVTQAMPARFVEEVGASLASA
MALATARMLV
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