prot_Ecto-sp13_S_contig806.19396.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig806.19396.1
Unique Nameprot_Ecto-sp13_S_contig806.19396.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length1182
Homology
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BLAST of mRNA_Ecto-sp13_S_contig806.19396.1 vs. uniprot
Match: D8LRQ1_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ1_ECTSI)

HSP 1 Score: 1434 bits (3713), Expect = 0.000e+0
Identity = 1055/1130 (93.36%), Postives = 1070/1130 (94.69%), Query Frame = 0 
Query:   54 MSKACTLLACGVGLQSWVCTDGFAGNAWRSSPSSNKAERSATHACVAVPPAETATARWQQRRPAARVSASRSSCRRVSGATIACSRTESASTVQVQENGGGDTQQVGDASWEDGEGAAADGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVTANGGRNKLFDLLNDLEGGGGGGLEAIELLGVEKTTHGVGGSSGSMLLKGGPGQQHVVDHVALPPQHXXXXXXXXXXXXXAAERGLLPGPLKKSAGRKFSRRQGRMPPLTRSQSEEWRVLPMAERIQEIRHSKMKKKDPMKEEKCMEVTQILDKVKEEHGERGLGLTFIYSLGMRTCLDFGQPEKVVTLFSELKTFKESPPNRQAFEAASIAHSQLKQGDAAMEVILEMKESGWLPTERAYKTLLETIRGTEGASAVANRVIQLYVEDEDPEGGGAGLLPTSMDLCHQYLMVLAWANEWEQALEFFFKLVERGQPHPDQNCYNAVLHALNRSERWEETTRVMEAFRSHVRLMQHQQLEAPKPMRSLFLSALSTLLRVAKRTEGVEGYDEQESEAAMDEAIKVWKELKASGMYEGISPYSAGRLLHPLFNACDKHVKYWPTALEVFDIMESYEYSPDRSDDRWRDDEKAIGWRGGDGGISADERMAKEEDRTAPTAGEYRSMLHILSHSRDAERGANWERSMELLREAQESELPISESSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDVVSYTSAICACGPDWLLAXXXXXXXXXXXXXXXXXXXXXXXXXXFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAHDADENHYGRASLEAELTEAGLSLQDKEWETAWVPPPDLGGGFSEIGEPGYDVGPPRRGGGGRWGDQGMGGGS-YGQFEDYEGGG 1182
            MS+ACTLLACGV LQSWVCTDGFAGNAWRSSPS NKAE++ATH CVA PPAE ATA WQQRRPAARV ASRSSCRRVSGATIACSRTESAST+QVQENGGGDTQQ+GDA WEDGEGAAAD I                            PVTANGGRNKLFDLLNDLEGGGGGGLEAIELLGVEKT HGVGGSS SMLL+G  GQ+HVVDHVALPP  XXXXXXXXXXXXX  E  LL  P KKSAGRKFSRRQGR+PPLTRSQSEEWRVLPMAERIQEIRHSKMKKKDPMKEEKCMEV Q+LDKVKEEHGERGLGLTFIYSLGMRTCLDFGQPEKV+ LFSELKTFKESPPNRQAFEAASIAHSQLKQGDAAMEVILEMKESGWLPTERAYKTLLETIRGTEGASAVANRVIQLYVEDEDPEGGGAGLLPTSMDLCHQYLMVLAWANEWEQALEFFFKLVERGQPHPDQNCYNA LHALNRSERWEET RVMEAFRSHVRLMQHQQLEAPKPMRSLFLSALSTLLRVAKRTEGVEGYDEQESEAAMDEAIKVWKELKASGMYEGISPYSAGRLLHPLFNACDKH KYWPTALEVFD+MESYEYSPD+SDDRWRD+EKA GWRGGDGGISADERMAKEEDRTAPTAGEYRSMLHILSHSRDAERGANWERSMELLREAQE+ELPISESSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDVVSYTSAICACGPDWLLAXXXXXXXXXXXXXXXXXXXXXXXXXXFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAHDADENHYGRASLEAELTEAGLSLQDKEWETAWVPPPDLGG FSEIGEPGYDVGPPR+ GGGRWGDQG GGGS YGQFEDYEGGG
Sbjct:    1 MSRACTLLACGVSLQSWVCTDGFAGNAWRSSPSGNKAEKTATHTCVAAPPAEAATAGWQQRRPAARVLASRSSCRRVSGATIACSRTESASTLQVQENGGGDTQQLGDAPWEDGEGAAADEIEAAGAGGASTPSGTDEEDRSKRRKRK--PVTANGGRNKLFDLLNDLEGGGGGGLEAIELLGVEKTAHGVGGSSSSMLLEGAAGQEHVVDHVALPPXXXXXXXXXXXXXXXXQE--LLSEPRKKSAGRKFSRRQGRVPPLTRSQSEEWRVLPMAERIQEIRHSKMKKKDPMKEEKCMEVMQMLDKVKEEHGERGLGLTFIYSLGMRTCLDFGQPEKVIALFSELKTFKESPPNRQAFEAASIAHSQLKQGDAAMEVILEMKESGWLPTERAYKTLLETIRGTEGASAVANRVIQLYVEDEDPEGGGAGLLPTSMDLCHQYLMVLAWANEWEQALEFFFKLVERGQPHPDQNCYNAALHALNRSERWEETIRVMEAFRSHVRLMQHQQLEAPKPMRSLFLSALSTLLRVAKRTEGVEGYDEQESEAAMDEAIKVWKELKASGMYEGISPYSAGRLLHPLFNACDKHAKYWPTALEVFDLMESYEYSPDKSDDRWRDEEKASGWRGGDGGISADERMAKEEDRTAPTAGEYRSMLHILSHSRDAERGANWERSMELLREAQENELPISESSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDVVSYTSAICACGPDWLLAXXXXXXXXXXXXXXXXXXXXXXXXXXFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAHDADENHYGRASLEAELTEAGLSLQDKEWETAWVPPPDLGGAFSEIGEPGYDVGPPRKAGGGRWGDQGSGGGSSYGQFEDYEGGG 1126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig806.19396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRQ1_ECTSI0.000e+093.36Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 879..926
e-value: 1.3E-11
score: 44.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 848..881
e-value: 5.9E-4
score: 17.8
coord: 812..845
e-value: 0.0014
score: 16.6
coord: 1056..1088
e-value: 4.9E-4
score: 18.1
coord: 778..811
e-value: 8.8E-5
score: 20.4
coord: 882..915
e-value: 1.1E-6
score: 26.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 937..995
e-value: 0.0015
score: 18.5
coord: 762..823
e-value: 9.5E-11
score: 41.6
coord: 1007..1064
e-value: 1.4E-9
score: 37.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 950..984
score: 7.421
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..441
score: 7.377
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 775..809
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 487..521
score: 5.503
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 371..405
score: 6.292
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 915..949
score: 9.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 523..553
score: 7.333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1053..1087
score: 9.482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 845..879
score: 9.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1026..1052
score: 5.557
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 985..1019
score: 8.791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 625..660
score: 5.711
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 740..774
score: 9.109
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 810..844
score: 9.767
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 880..914
score: 12.441
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 323..476
e-value: 4.6E-8
score: 35.0
coord: 826..933
e-value: 1.0E-28
score: 102.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1032..1113
e-value: 2.5E-12
score: 48.5
coord: 484..663
e-value: 7.9E-7
score: 30.5
coord: 685..825
e-value: 9.7E-21
score: 75.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 934..1031
e-value: 2.1E-21
score: 78.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 914..1028
coord: 501..783
coord: 768..926
coord: 1029..1109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig806contigEcto-sp13_S_contig806:1730..14199 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig806.19396.1mRNA_Ecto-sp13_S_contig806.19396.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig806 1730..14199 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig806.19396.1 ID=prot_Ecto-sp13_S_contig806.19396.1|Name=mRNA_Ecto-sp13_S_contig806.19396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1182bp
MGLGRGGRSGADQGDRSAFVERSGSSKEQQNRQHQQRGGVIPRHTYRRRR
PDRMSKACTLLACGVGLQSWVCTDGFAGNAWRSSPSSNKAERSATHACVA
VPPAETATARWQQRRPAARVSASRSSCRRVSGATIACSRTESASTVQVQE
NGGGDTQQVGDASWEDGEGAAADGIGAAVGAGVGASASSGTEEEDRSRRR
KRKPVTANGGRNKLFDLLNDLEGGGGGGLEAIELLGVEKTTHGVGGSSGS
MLLKGGPGQQHVVDHVALPPQHQMEEEEEEEEEEEAAERGLLPGPLKKSA
GRKFSRRQGRMPPLTRSQSEEWRVLPMAERIQEIRHSKMKKKDPMKEEKC
MEVTQILDKVKEEHGERGLGLTFIYSLGMRTCLDFGQPEKVVTLFSELKT
FKESPPNRQAFEAASIAHSQLKQGDAAMEVILEMKESGWLPTERAYKTLL
ETIRGTEGASAVANRVIQLYVEDEDPEGGGAGLLPTSMDLCHQYLMVLAW
ANEWEQALEFFFKLVERGQPHPDQNCYNAVLHALNRSERWEETTRVMEAF
RSHVRLMQHQQLEAPKPMRSLFLSALSTLLRVAKRTEGVEGYDEQESEAA
MDEAIKVWKELKASGMYEGISPYSAGRLLHPLFNACDKHVKYWPTALEVF
DIMESYEYSPDRSDDRWRDDEKAIGWRGGDGGISADERMAKEEDRTAPTA
GEYRSMLHILSHSRDAERGANWERSMELLREAQESELPISESSFQTVMTD
LGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWDRAFKILD
EMSELAIKPDVVSFGAAISACGKGLEWRRALALLVRMQHDGIEPNLQCFN
NVIHGLGLAGEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYASAGESDMA
LDVLDTMEKNGVQPDKVTYGTLMKACDGEGAFSVMRSLMDEMEQRGIPMT
VHHYTTCIDAANRMEGTGMGWELWRQMGVKGVEPNNYAYSAIITTAAIDR
DVRTALRLLEEMKTKGISIDVVSYTSAICACGPDWLLALDVLEEMDKDGV
APNLLSFTAAMGACFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAHD
ADENHYGRASLEAELTEAGLSLQDKEWETAWVPPPDLGGGFSEIGEPGYD
VGPPRRGGGGRWGDQGMGGGSYGQFEDYEGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf