prot_Ecto-sp13_S_contig8033.19360.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8033.19360.1
Unique Nameprot_Ecto-sp13_S_contig8033.19360.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length487
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8033.19360.1 vs. uniprot
Match: A0A6H5KV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV07_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.980e-50
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 0 
Query:  119 RGGKTGLYDEGLMQVKYVVLLPCNTFGMMQVASFWVSGLPSQLLPAESCADRLKNASEKRNIFLVLGTLNAATVSGSGILTILFPYWAKVAADTFMALGVITV 221
            R GKTGLYDEGLMQV+Y VL PCNTF MMQVASFWVSGLPSQLLPAES A RLKNASE+RNI LVLGTLNA+TVSGSGILTILFPY AKVAADTFMALG ITV
Sbjct:    2 REGKTGLYDEGLMQVEYAVLFPCNTFAMMQVASFWVSGLPSQLLPAESYAARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAADTFMALGSITV 104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8033.19360.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.640e-30
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = 0 
Query:  112 IGIALVVRGGKTGLYDEGLMQVKYVVLLPCNTFGMMQVASFWVSGLPSQLLPAESCADRLKNASEKRNIFLVLGTLNAATVSGSGILTILFPYWAKVAADTFMALGVITVGTVIMFVAVQTTRLIDSSASKSSEVSKTFYVKAKWNVWLQAMGFCGTLACAVLVGVLRGLTAAGQGTPNMLWYFQV 297
            + I L VR G  G +D+G +QV Y++L PC  F +  +A +WV  LPSQ+L  +S A +L+NASE  ++F+V+G  N   VS  G++T     W + AAD F+  G++T G                     S  S+TFY KAK N+W+QA    G     +LV  ++ LT AG+ TP +L   QV
Sbjct:    1 MAIGLAVRAGDIGYHDDGPLQVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGGILTAG---------------------SPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQV 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8033.19360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV07_9PHAE2.980e-5088.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX1_9PHAE3.640e-3037.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..97
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 207..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 237..255
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 310..486
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..77
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..236
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 280..290
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 118..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..159
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 160..179
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 180..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 256..279
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 291..309
NoneNo IPR availableTMHMMTMhelixcoord: 212..230
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 293..310
NoneNo IPR availableTMHMMTMhelixcoord: 256..278
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 56..78
NoneNo IPR availableTMHMMTMhelixcoord: 180..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8033contigEcto-sp13_S_contig8033:1531..6436 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8033.19360.1mRNA_Ecto-sp13_S_contig8033.19360.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8033 428..6453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8033.19360.1 ID=prot_Ecto-sp13_S_contig8033.19360.1|Name=mRNA_Ecto-sp13_S_contig8033.19360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=487bp
MCYLSRCHSCVQDCRHSAWGGNGICFGDSAPATCSCDAGFASRDAFGDAS
CVPERVLVTGYIVLAAGSFVLGVLLVWHTVQYRFLRTATRRSTNRMRALM
SCSVYVVGSGLIGIALVVRGGKTGLYDEGLMQVKYVVLLPCNTFGMMQVA
SFWVSGLPSQLLPAESCADRLKNASEKRNIFLVLGTLNAATVSGSGILTI
LFPYWAKVAADTFMALGVITVGTVIMFVAVQTTRLIDSSASKSSEVSKTF
YVKAKWNVWLQAMGFCGTLACAVLVGVLRGLTAAGQGTPNMLWYFQVFVG
HGASGMFALTTRFEASAGRLSTPAQSDADRSLVVSARRAFVSVGATRFAD
MPLKHLVLKRRDSTDSENESTSSDFHTIEHVRETQCPQQGVYNPTERPMP
GASGSSCGEEKKNDSSGGGRTGGAGSGPVRGVRPYGQQGGQSSNPCFDYS
VCSPTTGSSLGVEKEERRLRHGNIGRKILPIEGIAK*
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