prot_Ecto-sp13_S_contig72563.18392.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72563.18392.1
Unique Nameprot_Ecto-sp13_S_contig72563.18392.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length54
Homology
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: D8LFF2_ECTSI (Ribosomal_L16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.410e-28
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLV +  E
Sbjct:    5 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKE 58          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A0H5RFD8_9EUKA (Ribosomal_L16 domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RFD8_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 3.500e-24
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +  E
Sbjct:    6 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKE 59          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A7S2Y043_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y043_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.940e-24
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIY+VG KKA VD FP VVHLV +  E
Sbjct:   33 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYDVGQKKAGVDYFPCVVHLVSDEKE 86          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: M4BZN7_HYAAE (Ribosomal_L16 domain-containing protein n=174 Tax=Oomycota TaxID=4762 RepID=M4BZN7_HYAAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-23
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY+VGNKKASVD FP V HLV +  E
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKE 58          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A6G0WLK8_9STRA (Ribosomal_L16 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLK8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.790e-23
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY++GNKKASVD FP V HLV +  E
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDIGNKKASVDAFPFVAHLVSDEKE 58          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A7R9U1D6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.350e-23
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PARCYRFQKNKP+IKSRYCRGVPDPKIRIYE GNK+  VD FP V+HLV +  E
Sbjct:   33 PARCYRFQKNKPYIKSRYCRGVPDPKIRIYECGNKRMGVDHFPYVIHLVSDEKE 86          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A5D6Y3Y7_9STRA (Ribosomal_L16 domain-containing protein n=4 Tax=Pythium TaxID=4797 RepID=A0A5D6Y3Y7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.330e-23
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +  E
Sbjct:    5 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKE 58          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: F0YC85_AURAN (Ribosomal_L16 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC85_AURAN)

HSP 1 Score: 94.4 bits (233), Expect = 1.290e-22
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PARC RFQKNKP+IKSRYCRGVPDPKIRI++ GNKKASVD FP V HLV +  E
Sbjct:    5 PARCSRFQKNKPYIKSRYCRGVPDPKIRIFDCGNKKASVDQFPFVAHLVSDEKE 58          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A6G6C483_9STRA (Ribosomal protein L10 (Fragment) n=345 Tax=Oomycota TaxID=4762 RepID=A0A6G6C483_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.760e-22
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    2 ARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            A+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +  E
Sbjct:    1 AKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDAFPFVAHLVSDEKE 53          
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Match: A0A6A7G7Y2_9CRUS (60S ribosomal protein L10 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7Y2_9CRUS)

HSP 1 Score: 92.8 bits (229), Expect = 6.000e-22
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVRERGE 54
            PARCYR+QK+KP+IKSRYCRGVPDPKIRIY+VGNK A  D FP+ VHLV +  E
Sbjct:   13 PARCYRYQKDKPYIKSRYCRGVPDPKIRIYDVGNKSAVADQFPLCVHLVSQEKE 66          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72563.18392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF2_ECTSI1.410e-2892.59Ribosomal_L16 domain-containing protein n=2 Tax=Ec... [more]
A0A0H5RFD8_9EUKA3.500e-2477.78Ribosomal_L16 domain-containing protein (Fragment)... [more]
A0A7S2Y043_9STRA3.940e-2483.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4BZN7_HYAAE1.200e-2379.63Ribosomal_L16 domain-containing protein n=174 Tax=... [more]
A0A6G0WLK8_9STRA2.790e-2377.78Ribosomal_L16 domain-containing protein n=1 Tax=Ap... [more]
A0A7R9U1D6_9STRA3.350e-2377.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A5D6Y3Y7_9STRA5.330e-2377.78Ribosomal_L16 domain-containing protein n=4 Tax=Py... [more]
F0YC85_AURAN1.290e-2277.78Ribosomal_L16 domain-containing protein n=1 Tax=Au... [more]
A0A6G6C483_9STRA2.760e-2277.36Ribosomal protein L10 (Fragment) n=345 Tax=Oomycot... [more]
A0A6A7G7Y2_9CRUS6.000e-2274.0760S ribosomal protein L10 (Fragment) n=1 Tax=Hiron... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10coord: 1..54
e-value: 6.2E-19
score: 70.4
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 1..50
NoneNo IPR availablePANTHERPTHR11726:SF34coord: 1..50
IPR001197Ribosomal protein L10ePANTHERPTHR1172660S RIBOSOMAL PROTEIN L10coord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72563contigEcto-sp13_S_contig72563:327..488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72563.18392.1mRNA_Ecto-sp13_S_contig72563.18392.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72563 327..488 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72563.18392.1 ID=prot_Ecto-sp13_S_contig72563.18392.1|Name=mRNA_Ecto-sp13_S_contig72563.18392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVR
ERGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036920Ribosomal_L10e/L16_sf
IPR001197Ribosomal_L10e