prot_Ecto-sp13_S_contig72439.18376.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72439.18376.1
Unique Nameprot_Ecto-sp13_S_contig72439.18376.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length50
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72439.18376.1 vs. uniprot
Match: D7FPU1_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.910e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    2 VNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVCHVSAFE 48
            VNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQV   + ++
Sbjct:  167 VNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQ 213
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BLAST of mRNA_Ecto-sp13_S_contig72439.18376.1 vs. uniprot
Match: A0A6H5L0B7_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.090e-15
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    2 VNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVCHVSAFE 48
            VNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQV   + ++
Sbjct:  294 VNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQ 340
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BLAST of mRNA_Ecto-sp13_S_contig72439.18376.1 vs. uniprot
Match: A0A7S3Q8K2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8K2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.680e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:    1 QVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVCHVSA 46
            QVNEIY+DLANIV  QQ+ V+E+E + E A+  A+ GL Q+   SA
Sbjct:  218 QVNEIYKDLANIVSYQQDQVDEVEEHMESANKNAESGLKQIEKASA 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72439.18376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPU1_ECTSI9.910e-1685.11Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A6H5L0B7_9PHAE4.090e-1585.11t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3Q8K2_9STRA8.680e-554.35Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availableGENE3D1.20.5.110coord: 1..43
e-value: 1.1E-9
score: 39.8
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 1..44
score: 9.91
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 2..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72439contigEcto-sp13_S_contig72439:47..196 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72439.18376.1mRNA_Ecto-sp13_S_contig72439.18376.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72439 47..196 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72439.18376.1 ID=prot_Ecto-sp13_S_contig72439.18376.1|Name=mRNA_Ecto-sp13_S_contig72439.18376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
QVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVCHVSAFESK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR010989SNARE