prot_Ecto-sp13_S_contig7240.18373.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7240.18373.1
Unique Nameprot_Ecto-sp13_S_contig7240.18373.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length468
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7240.18373.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.950e-62
Identity = 113/126 (89.68%), Postives = 115/126 (91.27%), Query Frame = 0 
Query:    1 LTLINLWATSSMTVPLLIVRI--AFSKMRRVPRVIGSSRVIWSCVVVAMGLTLLSAPFWNDVLVTGSYFWITNSNDPKLSRWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKL 124
            LT INLWA SSM + LLI  I  AFSKMRRVPRVIGSSRVIWSCV VAMGLTLLSAPFWNDVLVTGSYFWITN NDP L+RWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKL
Sbjct:   47 LTSINLWAISSMAISLLIASIVQAFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKL 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7240.18373.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.400e-54
Identity = 101/194 (52.06%), Postives = 137/194 (70.62%), Query Frame = 0 
Query:    1 LTLINLWATSSMTVPLLIVRI--AFSKMRRVPRVIGSSRVIWSCVVVAMGLTLLSAPFWNDVLVTGSYFWITNSNDPKLSRWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKLYSILTAFGTCVYLYNGFVLLFDELSRLGSAKKELTMVGWCSKYLHVVADTLVLYYAFQTKDPQETDGV 192
            LT++NLW+ SS+ + +LI  I  +F  +RRVP +IGS+R    CVV+A+  T+LSA FWN VL+TG YFW+TN+++    RWISLSF  TQ +AG LMALT++F  TG+R  SL VC +TS+R+K + ILT FGT VYLYNG VL+FDE S        L ++GWCS+Y HV+ADT +++ AF   + +E D V
Sbjct:   72 LTVLNLWSISSLAIAILIASIVQSFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDF-KISTRLVIIGWCSRYAHVIADTGIIFGAFYALEKKEEDEV 264
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7240.18373.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.470e-53
Identity = 98/190 (51.58%), Postives = 135/190 (71.05%), Query Frame = 0 
Query:    1 LTLINLWATSSMTVPLLIVRI--AFSKMRRVPRVIGSSRVIWSCVVVAMGLTLLSAPFWNDVLVTGSYFWITNSNDPKLSRWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKLYSILTAFGTCVYLYNGFVLLFDELSRLGSAKKELTMVGWCSKYLHVVADTLVLYYAFQTKDPQE 188
            LT +NLW+ SS+ + +LI  I  +F K+RRVP +IGS+R    C+V+A+  T+LSA FWN VL+TG YFW+TN+ +    RWISLSF  TQ +AG LMAL ++F  +G+R  SL VC +TS+R+K + ILT FGT VYLYNG VL+FDE S      K L ++GWCS+Y+HV+ADT +++ AF   + +E
Sbjct:   72 LTALNLWSISSLAIAILIASIVQSFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDF-KISKRLVIIGWCSRYVHVIADTGIIFGAFYALEKKE 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7240.18373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUL8_ECTSI1.950e-6289.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRD9_9PHAE2.400e-5452.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI1.470e-5351.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..103
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 146..467
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 104..123
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..57
NoneNo IPR availableTMHMMTMhelixcoord: 81..103
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 4..23
NoneNo IPR availableTMHMMTMhelixcoord: 124..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7240contigEcto-sp13_S_contig7240:1001..7601 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7240.18373.1mRNA_Ecto-sp13_S_contig7240.18373.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7240 1001..7601 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7240.18373.1 ID=prot_Ecto-sp13_S_contig7240.18373.1|Name=mRNA_Ecto-sp13_S_contig7240.18373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=468bp
LTLINLWATSSMTVPLLIVRIAFSKMRRVPRVIGSSRVIWSCVVVAMGLT
LLSAPFWNDVLVTGSYFWITNSNDPKLSRWISLSFVTTQGIAGALMALTL
VFVATGKRRKSLLVCIRTSKRMKLYSILTAFGTCVYLYNGFVLLFDELSR
LGSAKKELTMVGWCSKYLHVVADTLVLYYAFQTKDPQETDGVPPASAADT
RGGGGGGRPGGTRDGGACPGDIENNENGNSSINVAAIKKEAMVLGDGDEA
DNADGGTGGDDGGGGRVGGGGARSGGRGGSSSASTGNCSGDTDANASRKL
DSDFSVSGSLVTVDKSGCGGGGADGGGSSQSPIGGKLDSDFSVSGSLVAV
EKTDGGCGGSQSPIGAGGRNATRPDTSAMKSAYSSRSSSLSSSLSSGDRS
NSFRVAVAAAALGSRPTRQHRRQRQQRQKENHHQKHRQNQQQQQQTTQPK
SAAPRVDDVEQQKPPPA*
back to top