prot_Ecto-sp13_S_contig7135.18241.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7135.18241.1
Unique Nameprot_Ecto-sp13_S_contig7135.18241.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length157
Homology
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 2.620e-99
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
Query:    1 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGS TITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  409 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.710e-77
Identity = 127/155 (81.94%), Postives = 137/155 (88.39%), Query Frame = 0
Query:    2 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV+DPS++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAIS+GNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  382 TVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 254 bits (650), Expect = 4.200e-77
Identity = 124/155 (80.00%), Postives = 140/155 (90.32%), Query Frame = 0
Query:    2 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV D S +DDKDYYGNKR+ELAG L+SLLFEDLFKRFNS+LKR ADMVLSKPNRA  FDI KF+ G +TIT GF HAIS+G+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  132 TVQDRSLLDDKDYYGNKRIELAGSLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAGGFDIVKFIRG-DTITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 252 bits (643), Expect = 2.450e-75
Identity = 122/155 (78.71%), Postives = 139/155 (89.68%), Query Frame = 0
Query:    2 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV D S +DDKDYYGNKRLELAG LISLLFEDLFKRFNS+LKR  DM+LSKPNRA  FD+ KF+  ++TIT GF HAIS+G+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  237 TVRDRSLLDDKDYYGNKRLELAGSLISLLFEDLFKRFNSDLKRQVDMILSKPNRAGGFDVMKFMR-ADTITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 390          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 234 bits (597), Expect = 4.940e-75
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = 0
Query:   10 DDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD VLSK NRA AFD+ K +  S+TIT G   AIS+GNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   88 DDKDYYGNKRLELAGNLLSLLFEDLFKHFNRDLKRQADQVLSKANRAQAFDVIKCIR-SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A7S0RUB9_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RUB9_9CHLO)

HSP 1 Score: 238 bits (607), Expect = 3.270e-74
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 0
Query:    1 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
              V+DPS VDDKDYYGNKRLELAGQL++LLFEDLFKR N++L++  D+ LSK NRA  FDI K +   +T++ G  HAISSGNW +KRF+++R+GVTQVLSRLSFISSLGMMTR+ SQF+K RKVSGPRALQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   21 QAVMDPSKVDDKDYYGNKRLELAGQLLALLFEDLFKRLNADLRKQVDIALSKANRATQFDIVKCIR-QDTLSHGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISSLGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNL 175          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A059LAC5_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LAC5_9CHLO)

HSP 1 Score: 228 bits (580), Expect = 3.600e-74
Identity = 111/153 (72.55%), Postives = 134/153 (87.58%), Query Frame = 0
Query:    4 IDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            +DP+ VD++DYYGNKRLELAG L++LLFEDLFKR N++L+R A+  LSK +RA AFD  K L  S+T+T G  HA+SSGNW ++RF+++R+GVTQVLSRLSFIS+LGMMTRV SQF+K RKVSGPRALQPSQWGM+CPADTPEGESCGLVKNL
Sbjct:    4 LDPTLVDNRDYYGNKRLELAGGLLALLFEDLFKRMNADLRRAAEAALSKASRANAFDAIKVLR-SDTLTYGLEHALSSGNWNIRRFRMERRGVTQVLSRLSFISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMVCPADTPEGESCGLVKNL 155          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A2P4YIY6_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4YIY6_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.030e-73
Identity = 118/152 (77.63%), Postives = 137/152 (90.13%), Query Frame = 0
Query:    5 DPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D + +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  ++TIT GF HA+S+GNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   41 DRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDILKCIR-TDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 191          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: M4C4J1_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4J1_HYAAE)

HSP 1 Score: 244 bits (624), Expect = 1.340e-73
Identity = 118/152 (77.63%), Postives = 137/152 (90.13%), Query Frame = 0
Query:    5 DPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D + +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  ++TIT GF HA+S+GNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  350 DRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDIIKCVR-TDTITQGFFHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 500          
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.410e-73
Identity = 111/148 (75.00%), Postives = 133/148 (89.86%), Query Frame = 0
Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            +DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR AD+VLSKPN A AFD+ K +   +TIT+G  +AI++GNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  105 LDDKDYYGNKRLELAGNLLSLLFEDLFKTFSKDLKRQADLVLSKPNLAQAFDVTKTIR-PDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7135.18241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE2.620e-9999.36DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA2.710e-7781.94DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A482SPL4_9ARCH4.200e-7780.00DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]
A0A7S3H3I2_9STRA2.450e-7578.71DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WKY6_9STRA4.940e-7578.23DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc... [more]
A0A7S0RUB9_9CHLO3.270e-7473.08DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyr... [more]
A0A059LAC5_9CHLO3.600e-7472.55DNA-directed RNA polymerase (Fragment) n=1 Tax=Hel... [more]
A0A2P4YIY6_9STRA1.030e-7377.63DNA-directed RNA polymerase subunit beta (Fragment... [more]
M4C4J1_HYAAE1.340e-7377.63DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]
A0A7S3PBU7_9STRA1.410e-7375.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 98..156
e-value: 1.9E-19
score: 69.6
NoneNo IPR availableGENE3D3.90.1100.10coord: 3..157
e-value: 8.1E-35
score: 122.5
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 3..156
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..156
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7135contigEcto-sp13_S_contig7135:1089..3111 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7135.18241.1mRNA_Ecto-sp13_S_contig7135.18241.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7135 1089..3111 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7135.18241.1 ID=prot_Ecto-sp13_S_contig7135.18241.1|Name=mRNA_Ecto-sp13_S_contig7135.18241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSNTITSGFTHAISSGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR015712DNA-dir_RNA_pol_su2