prot_Ecto-sp13_S_contig70708.18149.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig70708.18149.1
Unique Nameprot_Ecto-sp13_S_contig70708.18149.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length39
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70708.18149.1 vs. uniprot
Match: D8LJM6_ECTSI (RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.840e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 
Query:    6 QINTGDVEEVDGLFHDAKASAQLLTDDAEGYLH 38
            +IN GDVEEVDGLFHDAKASAQLL DDAEGYLH
Sbjct:  423 KINIGDVEEVDGLFHDAKASAQLLADDAEGYLH 455
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BLAST of mRNA_Ecto-sp13_S_contig70708.18149.1 vs. uniprot
Match: A0A7S1EGJ8_HEMAN (RuvB-like helicase n=8 Tax=Cryptophyceae TaxID=3027 RepID=A0A7S1EGJ8_HEMAN)

HSP 1 Score: 47.0 bits (110), Expect = 7.640e-5
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 0 
Query:    7 INTGDVEEVDGLFHDAKASAQLLTDDAEGYLH 38
            I +GD+EEVDGLF+DAK+SA+LL + A+ Y+H
Sbjct:  476 IASGDIEEVDGLFYDAKSSAKLLAEKADRYIH 507
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70708.18149.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJM6_ECTSI5.840e-1190.91RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S1EGJ8_HEMAN7.640e-562.50RuvB-like helicase n=8 Tax=Cryptophyceae TaxID=302... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 1..38
e-value: 8.4E-6
score: 27.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70708contigEcto-sp13_S_contig70708:564..680 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70708.18149.1mRNA_Ecto-sp13_S_contig70708.18149.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig70708 564..680 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig70708.18149.1 ID=prot_Ecto-sp13_S_contig70708.18149.1|Name=mRNA_Ecto-sp13_S_contig70708.18149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MRVTSQINTGDVEEVDGLFHDAKASAQLLTDDAEGYLH*
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