prot_Ecto-sp13_S_contig677.17692.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig677.17692.1
Unique Name	prot_Ecto-sp13_S_contig677.17692.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	943

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig677.17692.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 1367 bits (3538), Expect = 0.000e+0
Identity = 829/943 (87.91%), Postives = 843/943 (89.40%), Query Frame = 0

Query:    1 MSTNSAGSAIATGSDAGEARGPTNTSVIIGNLKRDVDKEALKALLCQLGRVTNFRLQQPPGIDPASPATGVVEYASPEDASRVVAHVHGKLILGRPVTAWVAAPGSTAPPLPPGAPPPTSAASATSTAGPRPARAAYHSEMDHRHANPNHDKNGGRYPPAVGHNANSHEDARWERPPXXXXXQPVXXXXXXXXQDTYGDGYSHNQRQKQ-HQSWRSGRPMPQQSAANVPVAPRYGGEGGSAHYAERQWQDQRHGHGEADESAAWERPDRNQFSAAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQVPHGNSSYDDGGHLRGPRGRAMMPRRALGGSVGVPPRSSDDGYGDDDVPAGAMRXXXXXNSASHGVPLPGRATAWTDDAEYTMPPPISIKGEDFEKEVVKAAALLVAEREMAREEARKQGKQDWSGVDPTTGYEGPRKSKKARSGSRSMGEETDERKKREPSSRKDENDGDHRPKSKKTRHDSSGDRHGSVGKRADERKGKTKTREESKGGPQGDDRDRKREDSSRRSHXXXXXXXXXXXXXXXXXXXXXDNDPDSSKSSPKLGFSSWDRKSFNGSPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPNEGPPRRWQESKGNHHKYEHEQEYHPNQARHANPRPEPQGSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGRGDRRSVELIEAINEAAGESGRGKHADDKNRGATDDPLGALRCPRPSATSRKEASGSVKPAEVNGRVKIGYGGKSTSRDATGGDGDSSFRKVNEPREKARPSNTGSSDTRRITDRLGSKTSFGRS 942
            MSTN AGSAIATGSD GEARGP NT VIIGNLKRDVDKEALKALLCQLG VTNFRLQQPPGIDPASPATGVVEYAS EDASRVVAHVHGKLILGRPVTAWVAAPGSTAPPLP G PP TSAA                             KNGGRYPPAVGHN NSHEDARWERP XXXXX   XXXXXXXXQDTYGDG SHNQRQ+Q HQSW SGRPMPQQS ANVP+APRYGGEGGSAHYAER WQDQRHGH EADESAAWERPDRNQF AAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQV HGNS+YDDGG  RGPRGRAMMPRRA  GSVGVPPRSSDDGYGDDDVPAGAMR     NSA HGVPL GRA AWTDDA+YTMPPPISIKGEDFEKEVVKAAALLVAEREMAREEARKQGKQ+WSG DPT GYEGPRKSKKARSGSRSMGEETDERKKREPSSRKDENDGDHRPKSKKTR DSSGDRHGSVGKRADERKGK +TREESKGGPQGDDRDRKREDSSR SH     XXXXXXXXXXXXXXXX NDPDSSKSSPK G SSWDRK FN SPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFD ERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPN+GPPRRWQESKGNHHK+EHE+EY PNQARH NPRPEPQGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R+GRGDRRSVELIEAI E+ G SGRGKHADDK+RGATDDPLGALRCPRPSATSRKEAS SVKPAEVNGRVKIGYGGKSTS D TGG+GDSSFRKVNEPR+ ARPSNTGSSDTRRITDRLGSKTSFGRS
Sbjct:    1 MSTNGAGSAIATGSDDGEARGPANTRVIIGNLKRDVDKEALKALLCQLGHVTNFRLQQPPGIDPASPATGVVEYASAEDASRVVAHVHGKLILGRPVTAWVAAPGSTAPPLPQGGPPSTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGGRYPPAVGHNPNSHEDARWERPXXXXXXXXXXXXXXXXXQDTYGDGLSHNQRQQQQHQSWHSGRPMPQQSGANVPIAPRYGGEGGSAHYAERHWQDQRHGHSEADESAAWERPDRNQFPAAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQVAHGNSAYDDGGQRRGPRGRAMMPRRASAGSVGVPPRSSDDGYGDDDVPAGAMRRLPPPNSAPHGVPLSGRAAAWTDDAQYTMPPPISIKGEDFEKEVVKAAALLVAEREMAREEARKQGKQNWSGADPTPGYEGPRKSKKARSGSRSMGEETDERKKREPSSRKDENDGDHRPKSKKTRRDSSGDRHGSVGKRADERKGKARTREESKGGPQGDDRDRKREDSSRTSHKDKHRXXXXXXXXXXXXXXXXXNDPDSSKSSPKQGSSSWDRKGFNSSPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPNQGPPRRWQESKGNHHKHEHEEEYRPNQARHTNPRPEPQGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------RHGRGDRRSVELIEAIKESGGRSGRGKHADDKDRGATDDPLGALRCPRPSATSRKEASASVKPAEVNGRVKIGYGGKSTSLDTTGGNGDSSFRKVNEPRKNARPSNTGSSDTRRITDRLGSKTSFGRS 932

[Close]

BLAST of mRNA_Ecto-sp13_S_contig677.17692.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 871 bits (2251), Expect = 2.530e-308
Identity = 562/616 (91.23%), Postives = 576/616 (93.51%), Query Frame = 0

Query:  327 MMPRRALGGSVGVPPRSSDDGYGDDDVPAGAMRXXXXXNSASHGVPLPGRATAWTDDAEYTMPPPISIKGEDFEKEVVKAAALLVAEREMAREEARKQGKQDWSGVDPTTGYEGPRKSKKARSGSRSMGEETDERKKREPSSRKDENDGDHRPKSKKTRHDSSGDRHGSVGKRADERKGKTKTREESKGGPQGDDRDRKREDSSRRSHXXXXXXXXXXXXXXXXXXXXXDNDPDSSKSSPKLGFSSWDRKSFNGSPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPNEGPPRRWQESKGNHHKYEHEQEYHPNQARHANPRPEPQGSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGRGDRRSVELIEAINEAAGESGRGKHADDKNRGATDDPLGALRCPRPSATSRKEASGSVKPAEVNGRVKIGYGGKSTSRDATGGDGDSSFRKVNEPREKARPSNTGSSDTRRITDRLGSKTSFGRS 942
            MMPRRA G SVGVPPRS+DDGYGDDDVP+GAMR   X NSASHGVPLPGRA AWTDDAEYTMPPPISIKGEDFEKEVVKAAALLVAEREMAREEARKQGKQDWSGVDPT G+EGPRKSKKARSG RSMGEETDERKKREPSSRKDENDGDHRP+SKKTR DSSGDRHGSVGKRADERKGKT+TREESKGGPQGDDRDRKRE       XXXXXXXXXXXXXXXXXXXX DND DSSKS PK G S+WDRK FN SPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPN+GPPRRWQESKGNH+K+EH+QEYHPNQ RHANPRPEP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR+GRGD RSVELIEAI E+ G SGRGK ADDK+RGATDDPLGALRCPRPSATSRKEAS SVKPAEVNGRVKIGYGGKSTSRDATG +GDSSFRKV E RE ARPSNT SSDTRRITDRLGSKTSFGRS
Sbjct:    1 MMPRRASGSSVGVPPRSNDDGYGDDDVPSGAMRRPPXPNSASHGVPLPGRAAAWTDDAEYTMPPPISIKGEDFEKEVVKAAALLVAEREMAREEARKQGKQDWSGVDPTPGHEGPRKSKKARSGGRSMGEETDERKKREPSSRKDENDGDHRPRSKKTRRDSSGDRHGSVGKRADERKGKTRTREESKGGPQGDDRDRKREXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNDLDSSKSLPKQGSSTWDRKDFNSSPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPNQGPPRRWQESKGNHNKHEHDQEYHPNQGRHANPRPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRGDSRSVELIEAIKESGGGSGRGKLADDKDRGATDDPLGALRCPRPSATSRKEASASVKPAEVNGRVKIGYGGKSTSRDATGSNGDSSFRKVVETRENARPSNTSSSDTRRITDRLGSKTSFGRS 616

[Close]

BLAST of mRNA_Ecto-sp13_S_contig677.17692.1 vs. uniprot
Match: UPI000B8D12BE (glycine-rich RNA-binding protein RZ1A n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D12BE)

HSP 1 Score: 56.6 bits (135), Expect = 3.690e-5
Identity = 39/109 (35.78%), Postives = 51/109 (46.79%), Query Frame = 0

Query:  597 VGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQG--RPHSGGR 703
            +GGLS+STT   L   F  FG +   KV+ +K S                        S GF F++FD ++ ME A+E M+G  LDG  + V R    QG  R H GGR
Sbjct:   11 IGGLSWSTTDRGLKDAFEKFGHLLEAKVVVDKFS----------------------GRSRGFGFVTFDEKKAMEDAIEAMNGMDLDGRNITVDRAQPQQGSSRDHDGGR 97

[Close]

BLAST of mRNA_Ecto-sp13_S_contig677.17692.1 vs. uniprot
Match: A0A0D9W144_9ORYZ (RRM domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9W144_9ORYZ)

HSP 1 Score: 53.9 bits (128), Expect = 8.050e-5
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 0

Query:  593 FYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKV 688
            F   +G LS+STT  +L   F  FG++   KV+F+K S                        S GF F++FD ++ ME A+E M+G  LDG  + V
Sbjct:    7 FRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYS----------------------GRSRGFGFVTFDEKKAMEDAIEGMNGLDLDGRAITV 80

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig677.17692.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig677.17692.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A6H5JE04_9PHAE	0.000e+0	87.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LJZ2_ECTSI	2.530e-308	91.23	Polyphosphate kinase 2 family protein n=1 Tax=Ecto...	[more]
UPI000B8D12BE	3.690e-5	35.78	glycine-rich RNA-binding protein RZ1A n=1 Tax=Cari...	[more]
A0A0D9W144_9ORYZ	8.050e-5	33.33	RRM domain-containing protein n=1 Tax=Leersia perr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 26..100 e-value: 1.2E-4 score: 31.5 coord: 594..689 e-value: 5.7E-12 score: 55.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 27..97 e-value: 6.0E-8 score: 32.4 coord: 646..686 e-value: 2.7E-7 score: 30.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 25..104 score: 11.998
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 593..693 score: 13.294
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..108 e-value: 2.5E-12 score: 48.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 517..694 e-value: 1.1E-17 score: 66.4
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 595..777 coord: 29..492
None	No IPR available	PANTHER	PTHR23147:SF75	SERINE-ARGININE PROTEIN 55	coord: 595..777 coord: 29..492
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 535..690
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 21..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig677	contig	Ecto-sp13_S_contig677:5721..13604 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig677.17692.1	mRNA_Ecto-sp13_S_contig677.17692.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig677 5721..14080 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig677.17692.1 ID=prot_Ecto-sp13_S_contig677.17692.1|Name=mRNA_Ecto-sp13_S_contig677.17692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=943bp
MSTNSAGSAIATGSDAGEARGPTNTSVIIGNLKRDVDKEALKALLCQLGR
VTNFRLQQPPGIDPASPATGVVEYASPEDASRVVAHVHGKLILGRPVTAW
VAAPGSTAPPLPPGAPPPTSAASATSTAGPRPARAAYHSEMDHRHANPNH
DKNGGRYPPAVGHNANSHEDARWERPPPPQQGQPVVKRAPPPPQDTYGDG
YSHNQRQKQHQSWRSGRPMPQQSAANVPVAPRYGGEGGSAHYAERQWQDQ
RHGHGEADESAAWERPDRNQFSAAQRAPMRQQPPPSFHRPTGPQTSEWYD
DADSQVPHGNSSYDDGGHLRGPRGRAMMPRRALGGSVGVPPRSSDDGYGD
DDVPAGAMRRPPPPNSASHGVPLPGRATAWTDDAEYTMPPPISIKGEDFE
KEVVKAAALLVAEREMAREEARKQGKQDWSGVDPTTGYEGPRKSKKARSG
SRSMGEETDERKKREPSSRKDENDGDHRPKSKKTRHDSSGDRHGSVGKRA
DERKGKTKTREESKGGPQGDDRDRKREDSSRRSHKDKHRDSRSGSRTRRS
SSRARDNDPDSSKSSPKLGFSSWDRKSFNGSPWENQHQATGGFYVHVGGL
SFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAA
VVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHS
GGRAFRAQAEPTPPNEGPPRRWQESKGNHHKYEHEQEYHPNQARHANPRP
EPQGSYTKPRPEQQGYHTKPRPEQQGYNTRPRPEQQGYNTMPRPEKQGYY
TKPKLQQEGYHTKPRNGRGDRRSVELIEAINEAAGESGRGKHADDKNRGA
TDDPLGALRCPRPSATSRKEASGSVKPAEVNGRVKIGYGGKSTSRDATGG
DGDSSFRKVNEPREKARPSNTGSSDTRRITDRLGSKTSFGRS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf