prot_Ecto-sp13_S_contig6618.17472.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6618.17472.1
Unique Nameprot_Ecto-sp13_S_contig6618.17472.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length160
Homology
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: D7FUB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB0_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 5.140e-84
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    8 TERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            TERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV
Sbjct:   92 TERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 224          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A835YHF5_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHF5_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.450e-54
Identity = 85/133 (63.91%), Postives = 115/133 (86.47%), Query Frame = 0
Query:    8 TERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            T+RK +E+A+++K VFEGA+ML LYPRTQID+Y+H+IQ+DGG LP  INAASLAL DAG++M D+VV+CSAG++DG  VMDLN++EQ+ GG Y+P+A+LP   ++LLAKME+RLPL+IF+EVL  A +AC+QV
Sbjct:   91 TDRKTVEMAMSIKAVFEGAVMLELYPRTQIDLYIHLIQTDGGQLPASINAASLALTDAGISMRDMVVSCSAGHVDGQAVMDLNHMEQSHGGAYVPLAILPRGSEILLAKMEARLPLDIFQEVLATALEACRQV 223          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A7S2V0R5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0R5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.590e-49
Identity = 78/134 (58.21%), Postives = 110/134 (82.09%), Query Frame = 0
Query:    7 QTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            Q +R+  EIA  V++ FEGA+M  LYPRTQIDI+LH++Q+DGG L   +NAASLALVDAGV M D+VVAC+AG+++  P+MDLNYVE++ GGP LP+AV+P++++++LA+M+++LPL++FE VL  A  AC QV
Sbjct:   87 QGDRRSQEIAQGVRQTFEGAVMRELYPRTQIDIHLHLLQADGGTLCACLNAASLALVDAGVGMKDMVVACTAGFIEATPIMDLNYVEESSGGPCLPLAVMPKRNEVVLAQMDAKLPLDVFEAVLETARQACDQV 220          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A6V1TQR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TQR2_HETAK)

HSP 1 Score: 167 bits (422), Expect = 5.990e-49
Identity = 82/139 (58.99%), Postives = 108/139 (77.70%), Query Frame = 0
Query:    8 TERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVLQAHPN 146
            T+R+  E+  AV+E   GA+   LYPR+QID+YLHV+Q+DGG LP  INAASLALVDAGVA  D+ VAC+AG + G  V+DLNY+EQ  GG YLPVA+LP+++K++LA M+S+LPLE+FEEVL+ A +ACQ+V     N
Sbjct:   94 TDRRSAEVCRAVQETLAGAVCRELYPRSQIDVYLHVLQTDGGELPCAINAASLALVDAGVAARDMAVACAAGRVAGETVVDLNYMEQNSGGVYLPVAILPKRNKIVLAMMDSKLPLEVFEEVLQVAMEACQEVYSVLQN 232          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A1Y1I745_KLENI (3'-5'-exoribonuclease family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I745_KLENI)

HSP 1 Score: 152 bits (385), Expect = 2.100e-43
Identity = 76/152 (50.00%), Postives = 110/152 (72.37%), Query Frame = 0
Query:    9 ERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVLQAHPNNSISRNSRSGFVLR 160
            +R+ +E++L +++  E AI+ HL PRTQIDIY+ V+Q+DGG     INAA+LAL DAGV M DLV +C+AGYL+G P++DLNYVE + GGP L VA+LP+ +K+ L +M+S+LPL+ FE VL  A D C+ +  AH   ++  ++R   V+R
Sbjct:   89 DRRSVELSLVIRQSMEAAILTHLLPRTQIDIYVQVLQADGGTRAACINAATLALADAGVPMRDLVASCAAGYLNGTPLLDLNYVEDSAGGPDLTVALLPKAEKVTLLQMDSKLPLDTFEAVLGLAMDGCKAIA-AHMRQALLEHTRKQAVVR 239          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: D2VEP3_NAEGR (Predicted protein n=2 Tax=Naegleria TaxID=5761 RepID=D2VEP3_NAEGR)

HSP 1 Score: 147 bits (372), Expect = 2.120e-41
Identity = 67/137 (48.91%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    4 RLLQTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            R  + +R+  EI++ +++ FE  I+ HLYPRTQIDI++ V+Q+DGG     INAA+LAL+DAG+ M D VV+C+AG++ G P+ DLNY+E   GGP +P+A+LP+ DK+ L +M+S+L L+ FE+VL  A + C+Q+
Sbjct:   88 RQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQI 224          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A0D2U8G7_CAPO3 (Exosome component 4 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U8G7_CAPO3)

HSP 1 Score: 146 bits (369), Expect = 6.690e-41
Identity = 71/135 (52.59%), Postives = 101/135 (74.81%), Query Frame = 0
Query:    6 LQTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            ++T+++ +++A AV+  FEGA+M  LYPR+QIDI+L V+QSDGG   V INAA+LAL+DAG+AM D V ACS G +D  P++D+NY+E + GGP L VAVL    K +L +M+SRL ++ F++VLR A D CQ +
Sbjct:   91 VRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAI 225          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A161X5C4_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161X5C4_DAUCS)

HSP 1 Score: 144 bits (363), Expect = 2.430e-40
Identity = 67/132 (50.76%), Postives = 98/132 (74.24%), Query Frame = 0
Query:    9 ERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            +R+  EI+L +++  E  IM HL PR+QIDI++ V+Q+DGG     INAA+LAL DAG+ M DLV +CSAGYL+  P++DLNYVE + GGP + V +LP+  K+ L +M+S+LP++IFE V++ AT+ C+ V
Sbjct:   71 DRRSTEISLVIRQTMEACIMTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMHDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKSTKVTLLQMDSKLPMDIFENVMQLATEGCKAV 202          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A6P5MBP0_ARADU (exosome complex component RRP41 homolog isoform X2 n=6 Tax=Arachis TaxID=3817 RepID=A0A6P5MBP0_ARADU)

HSP 1 Score: 144 bits (362), Expect = 3.940e-40
Identity = 67/132 (50.76%), Postives = 98/132 (74.24%), Query Frame = 0
Query:    9 ERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            +R+  EI++ +++  E  IM HL PR+QIDIY+ V+Q+DGG     INAA+LAL DAG+ M DLV +CSAGYL+  P++DLNYVE + GGP + V +LP+ DK+ L +M+S+LP++I E V++ AT+ C+ V
Sbjct:   76 DRRSTEISMVIRQTMEACIMTHLMPRSQIDIYVQVLQADGGTRSACINAATLALSDAGIPMCDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAV 207          
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Match: A0A2K3PMP7_TRIPR (Exosome complex component rrp41-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PMP7_TRIPR)

HSP 1 Score: 141 bits (356), Expect = 6.970e-40
Identity = 64/132 (48.48%), Postives = 97/132 (73.48%), Query Frame = 0
Query:    9 ERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQV 140
            +R+  EI+L +++  E  I+ HL PR+QIDIY+ V+Q+DGG     INAA+LA  DAG+ M DLV +CSAGYL   P++DLNYVE + GGP + V +LP+ DK++L +M+S+LP++I E V++ +T+ C+ +
Sbjct:   23 DRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLQADGGTRSACINAATLAFADAGIPMRDLVTSCSAGYLHSTPLLDLNYVEHSAGGPDVTVGILPKLDKVMLLQMDSKLPIDILENVMQLSTEGCKAI 154          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6618.17472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB0_ECTSI5.140e-84100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YHF5_9STRA1.450e-5463.91Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2V0R5_9STRA2.590e-4958.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1TQR2_HETAK5.990e-4958.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Y1I745_KLENI2.100e-4350.003'-5'-exoribonuclease family protein n=1 Tax=Klebs... [more]
D2VEP3_NAEGR2.120e-4148.91Predicted protein n=2 Tax=Naegleria TaxID=5761 Rep... [more]
A0A0D2U8G7_CAPO36.690e-4152.59Exosome component 4 n=1 Tax=Capsaspora owczarzaki ... [more]
A0A161X5C4_DAUCS2.430e-4050.76Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
A0A6P5MBP0_ARADU3.940e-4050.76exosome complex component RRP41 homolog isoform X2... [more]
A0A2K3PMP7_TRIPR6.970e-4048.48Exosome complex component rrp41-like protein (Frag... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 8..67
e-value: 6.8E-14
score: 52.5
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 2..154
e-value: 2.0E-37
score: 130.9
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 71..135
e-value: 4.6E-7
score: 29.8
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 7..144
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 7..144
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 69..143
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 8..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6618contigEcto-sp13_S_contig6618:1187..2676 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6618.17472.1mRNA_Ecto-sp13_S_contig6618.17472.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6618 1187..2676 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6618.17472.1 ID=prot_Ecto-sp13_S_contig6618.17472.1|Name=mRNA_Ecto-sp13_S_contig6618.17472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MSHRLLQTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGV
LPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPY
LPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVLQAHPNNSIS
RNSRSGFVLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR015847ExoRNase_PH_dom2
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold