prot_Ecto-sp13_S_contig6439.17201.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6439.17201.1
Unique Nameprot_Ecto-sp13_S_contig6439.17201.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length666
Homology
BLAST of mRNA_Ecto-sp13_S_contig6439.17201.1 vs. uniprot
Match: A0A6H5KBC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC9_9PHAE)

HSP 1 Score: 960 bits (2481), Expect = 0.000e+0
Identity = 580/667 (86.96%), Postives = 602/667 (90.25%), Query Frame = 0
Query:    1 MPPSSTSSASGLSSTAGARRGGEGCGWSAAGAVKGECVMSPVKQEPGVEGGEIGEGGATSGFAGAGAVGDAGVTAWLGDDHASVKREQPRGRRRGDEKTRVGQPRLEDEEKEEESEKQPVPIMSSATPRAQLQPWLLERPQQWLLLQQQXXXXXXXXXXXXRQPKQPGVEEVQEGDEAEAAGGVECFGEDVSTDEAFLDWADVLAGSPDPPALNDSALPDVNIQGLDTSVGGSSAATAETAAGGLLSEPERPRSVSHSVFSIGSDGSWRPATERTGLDLGALREEAPVNGGRPRPGDGPGGRWGGSESHHHRQRLDQDTSADRGARSVSDSALCGAAPSAQRALPGEGTAWDLLFTRCAERSTPPVIGTGGLSSTADTRRAPAQGALTAAAGGSPGMCALSGADGGGGVGASTQQQGQPPLPLDVDFSDLLLTPEELFRPPXXXXXXXXXXXXXXXXXXXXXXGS--GNLLTMQTLGIFNQTLLSDLPWANYGVSGGNCDAFRDPAAGAAPATXXXXXXXXXIGGMLDGGSWASATPSAGLAGLGQQSRGGDETAAGAPPHHKNPGGVTGSKGGFSAAASAASTAMDLSADGNELTGCQLGGAWPMQGGMLFSRTPLDAEAEMGSTNRGLGDAWGGGGDVPGGDLRNTSGHPSQSMSNFSSAPNGFG 665
            MPP STSSASGL  TAGARRGGEG G SAAGA KGEC MSPV+QE GVE G++ +GGAT+GFAGAGAVGDAG+TAWL DD ASV REQPRGRR GD+KT VGQPRLEDEEKEEESEK PVP++SSAT R  LQPWLLERPQQWLL QQQXXXXXXXXXXXX QPKQPG +EVQEGD AEAAGGVE FGEDVSTDEAFLDWADVLAGSP PPALNDS LP+V +QGLDTSVGGSSAAT ETAAGGLLS PERPRSVSHSV SIGSDGSWRPATERTGLDLGALREEAPVNGGRPR GDGPGGRWGGSESHHHR RL QD SAD GARSVSDSALC  APS +R LPGEGTAWDLLFTRCAER TPPVIGTGGLSSTADTRRAPAQG LTAAAGGSPGMC LSGADGG GVGASTQQQGQPPLPL VDFSDLLLTPEELFRP XXXXXXXXXXXXXXXXXXXXXX    GNLLTMQTLG+FN TLLSDLPWANYGVSGGNCDAFRDPAAG APA XXXXXXXXXIGGML  GSWASA PS GLA LGQQSRGGDETA+GAPPHHKN GGVTG +GG SAAASAASTAMDLSADGN+LTGCQLGGAWP+QG MLFSR PLDAEAE+GSTNRGLGDAWGGGGD+PGGDLRNTSGH  QS+S+FSSAPNG G
Sbjct:    1 MPPPSTSSASGLCFTAGARRGGEGGGRSAAGAGKGECAMSPVEQELGVEEGDLRKGGATAGFAGAGAVGDAGLTAWLADDRASVTREQPRGRR-GDDKTCVGQPRLEDEEKEEESEKHPVPLLSSATQRTPLQPWLLERPQQWLL-QQQXXXXXXXXXXXXXQPKQPGEQEVQEGDMAEAAGGVEGFGEDVSTDEAFLDWADVLAGSPSPPALNDSTLPEVYVQGLDTSVGGSSAATVETAAGGLLSVPERPRSVSHSVVSIGSDGSWRPATERTGLDLGALREEAPVNGGRPRLGDGPGGRWGGSESHHHRHRLTQDMSADGGARSVSDSALCVTAPSVRRTLPGEGTAWDLLFTRCAER-TPPVIGTGGLSSTADTRRAPAQGVLTAAAGGSPGMCELSGADGGEGVGASTQQQGQPPLPLGVDFSDLLLTPEELFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLLTMQTLGMFNPTLLSDLPWANYGVSGGNCDAFRDPAAGVAPAAXXXXXXXXXIGGMLHSGSWASAAPSTGLAELGQQSRGGDETASGAPPHHKNLGGVTGPRGGLSAAASAASTAMDLSADGNDLTGCQLGGAWPVQGDMLFSRIPLDAEAEIGSTNRGLGDAWGGGGDMPGGDLRNTSGHLGQSLSDFSSAPNGLG 664          
BLAST of mRNA_Ecto-sp13_S_contig6439.17201.1 vs. uniprot
Match: D8LH42_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH42_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 2.470e-62
Identity = 141/175 (80.57%), Postives = 148/175 (84.57%), Query Frame = 0
Query:  491 GVSGGNCDAFRDPAAGAAPATXXXXXXXXXIGGMLDGGSWASATPSAGLAGLGQQSRGGDETAAGAPPHHKNPGGVTGSKGGFSAAASAASTAMDLSADGNELTGCQLGGAWPMQGGMLFSRTPLDAEAEMGSTNRGLGDAWGGGGDVPGGDLRNTSGHPSQSMSNFSSAPNGFG 665
            GV GG      D   GAAPA XXXXXXXXXIGGML GGSWASATPSAGLAGLGQQS G DETA+ APPH KNPGGV+G K   SAAAS ASTAMDLSADGN+LTG QLGGAWP+QG ML SRTPLDAEAE+GSTNRGLGDAWG GG +PGGDLRNTSGH SQS+SNFSSAPNGFG
Sbjct:  491 GVEGG------DLGKGAAPAXXXXXXXXXXIGGMLHGGSWASATPSAGLAGLGQQSGGVDETASVAPPHQKNPGGVSGPKRRLSAAASVASTAMDLSADGNDLTGGQLGGAWPVQGDMLLSRTPLDAEAEIGSTNRGLGDAWGCGGGMPGGDLRNTSGHLSQSLSNFSSAPNGFG 659          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6439.17201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBC9_9PHAE0.000e+086.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH42_ECTSI2.470e-6280.57PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6439contigEcto-sp13_S_contig6439:5358..7355 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6439.17201.1mRNA_Ecto-sp13_S_contig6439.17201.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6439 3269..7631 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6439.17201.1 ID=prot_Ecto-sp13_S_contig6439.17201.1|Name=mRNA_Ecto-sp13_S_contig6439.17201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=666bp
MPPSSTSSASGLSSTAGARRGGEGCGWSAAGAVKGECVMSPVKQEPGVEG
GEIGEGGATSGFAGAGAVGDAGVTAWLGDDHASVKREQPRGRRRGDEKTR
VGQPRLEDEEKEEESEKQPVPIMSSATPRAQLQPWLLERPQQWLLLQQQQ
QQQQRQLLQQQRQPKQPGVEEVQEGDEAEAAGGVECFGEDVSTDEAFLDW
ADVLAGSPDPPALNDSALPDVNIQGLDTSVGGSSAATAETAAGGLLSEPE
RPRSVSHSVFSIGSDGSWRPATERTGLDLGALREEAPVNGGRPRPGDGPG
GRWGGSESHHHRQRLDQDTSADRGARSVSDSALCGAAPSAQRALPGEGTA
WDLLFTRCAERSTPPVIGTGGLSSTADTRRAPAQGALTAAAGGSPGMCAL
SGADGGGGVGASTQQQGQPPLPLDVDFSDLLLTPEELFRPPPAPAATAAA
ATGGGGGGASNSSGSGNLLTMQTLGIFNQTLLSDLPWANYGVSGGNCDAF
RDPAAGAAPATAAATGGGGGIGGMLDGGSWASATPSAGLAGLGQQSRGGD
ETAAGAPPHHKNPGGVTGSKGGFSAAASAASTAMDLSADGNELTGCQLGG
AWPMQGGMLFSRTPLDAEAEMGSTNRGLGDAWGGGGDVPGGDLRNTSGHP
SQSMSNFSSAPNGFG*
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