prot_Ecto-sp13_S_contig6376.17134.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6376.17134.1
Unique Nameprot_Ecto-sp13_S_contig6376.17134.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length52
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6376.17134.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.810e-25
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:    1 RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 49
            RFVRRKSGEPWLGILIPD+TGVVPTERLLFQKIPFIEDVRAFNFPSFAK
Sbjct:  356 RFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6376.17134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE9.810e-2597.96Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006164Ku70/Ku80 beta-barrel domainPFAMPF02735Kucoord: 1..47
e-value: 2.2E-6
score: 27.5
IPR016194SPOC-like, C-terminal domain superfamilyGENE3D2.40.290.10coord: 1..50
e-value: 5.5E-8
score: 34.6
IPR016194SPOC-like, C-terminal domain superfamilySUPERFAMILY100939SPOC domain-likecoord: 1..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6376contigEcto-sp13_S_contig6376:1..156 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6376.17134.1mRNA_Ecto-sp13_S_contig6376.17134.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6376 1..156 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6376.17134.1 ID=prot_Ecto-sp13_S_contig6376.17134.1|Name=mRNA_Ecto-sp13_S_contig6376.17134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFNFPSFAKV
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006164Ku70/Ku80_beta-barrel_dom
IPR016194SPOC-like_C_dom_sf