prot_Ecto-sp13_S_contig6375.17133.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6375.17133.1
Unique Nameprot_Ecto-sp13_S_contig6375.17133.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length501
Homology
BLAST of mRNA_Ecto-sp13_S_contig6375.17133.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.460e-109
Identity = 334/492 (67.89%), Postives = 349/492 (70.93%), Query Frame = 0
Query:   27 LRPSVLTDEISGRLSSAPAPTSSPVCRGHPSPHTGETGFAAAKGGGGAGCVPGATQQTERGETGEGSGEGDARIGGNGGAGAVTPVAGLAVASYGCAAXXXXXXXXXXXXXXXXXXXAKKSRNRDKKPRKHPPQHVSEMREGRKAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATAIVKPEAVPHKTSDELARIAFQRRRGAIHGNGGTAGRRPSVNTTGFGLGVGSVLQKPSVAAAATTAVTXXXXXXXXXXXXXXXXXXXXXXXXXX-------------TDGTEAIA--AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGAALSSGKNDFEISGGALSGGAKRK---------PPAQPLLRAPSKRGLQNSSSDNLCCVNAILQLLRHCPQLREGLLAYPTTFSTTNAAVNRSKRAAKEKREKQLATRGMAVLMEGMDNSSKRGACHVHPSLADYIYNEDDVSFGR 494
            LRPSVL DEI+GRLSSAPA  SSPVCRGHPS  TGETGFAAA+GGGG GCV GAT QTE GETGEGSGEGDARIGG     AV  V GLAVAS GCAA                           KK +K   Q V EMR+GRKAKK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AGATAIVKP+A  HKTSDELA +AFQRRRGAIHGNGGTAGRRPSVNT GFG+GVGSVLQKPSVAAAA     XXXXXXXXXXXXXXXXXXXXXXXXXX             T  T   A  AAXXXXXXXXXXXXXXXXXXXXXXXXXXX        AA                               PPA+PLL APSKRGLQNSSS NLCCVNA+LQLLRHCPQLREGL AYP TFS TNA  N S RAAKEKREKQLATRGMA+LM+ MD  S+RGACHVHPSLA+YIYNEDD+  G+
Sbjct:  607 LRPSVLRDEIAGRLSSAPASASSPVCRGHPSSQTGETGFAAARGGGGDGCVQGATCQTEAGETGEGSGEGDARIGG-----AVRAVVGLAVASGGCAATAASCPVTAGAVA--------------KKLQKDTRQWVLEMRDGRKAKKQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHGGGESAGATAIVKPKAARHKTSDELAVLAFQRRRGAIHGNGGTAGRRPSVNTAGFGVGVGSVLQKPSVAAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPATAPTATDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPTDANTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPARPLLGAPSKRGLQNSSSANLCCVNAVLQLLRHCPQLREGLSAYPRTFSATNAPGNSSTRAAKEKREKQLATRGMAMLMKRMDIPSRRGACHVHPSLANYIYNEDDLQRGQ 1079          
BLAST of mRNA_Ecto-sp13_S_contig6375.17133.1 vs. uniprot
Match: D7FYB9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 2.100e-78
Identity = 276/450 (61.33%), Postives = 290/450 (64.44%), Query Frame = 0
Query:   27 LRPSVLTDEISGRLSSAPAPTSSPVCRGHPSPHTGETGFAAAKGGGGAGCVPGATQQTERGETGEGSGEGDARIGGNGGAGAVTPVAGLAVASYGCAAXXXXXXXXXXXXXXXXXXXAKKSRNRDKKPRKHPPQHVSEMREGRKAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATAIVKPEAVPHKTSDELARIAFQRRRGAIHGNGGTAGRRPSVNTT-----------GFGLGVGSVLQK--PSVAAAATTAVTXXXXXXXXXXXXXXXXXXXXXXXXXXTDGTEAIAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGAALSSGKNDFEISGGALSGGAKRKPPAQPLLRAPSKRGLQNSSSDNLCCVNAILQLLRHCPQLREGLLAYPTTFSTTNAAVNRSKRAAKEKREKQLATRGMAVLME 463
            LRPSVL DEI+GRLSSAPA  SSPVCRGHPS  TGETGFAAA+GGGG GCV GAT QTE GETGEGSGEGDARIGG     AV  V GLAVAS GCAA                           KK +K   Q V EMR+GRKAKK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        AGATAIVKP+A  HKTSDELA +AFQRRRGAIHG      RR   +TT           G GL   +      P+ AA A TA T       XXXXXXX               T+A  AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            PPA+PLL APSKRGLQNSSS NLCCVNA+LQLLRHCPQLREGL AYP TFS TNA  N S RAAKEKREKQLATRGMA+LM+
Sbjct:  169 LRPSVLRDEIAGRLSSAPASASSPVCRGHPSSQTGETGFAAARGGGGDGCVQGATCQTEAGETGEGSGEGDARIGG-----AVRAVVGLAVASGGCAATAASCPVTAGAVA--------------KKLQKDTRQWVLEMRDGRKAKKQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKHGGGESAGATAIVKPKAARHKTSDELAVLAFQRRRGAIHGE-----RRDRGSTTFRQHRRVWRWGGLGLAAPTATDAAPPATAATANTAATAPVDTAAXXXXXXXVTP------------TDANTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------PPARPLLGAPSKRGLQNSSSANLCCVNAVLQLLRHCPQLREGLSAYPRTFSATNAPGNSSTRAAKEKREKQLATRGMAMLMK 554          
BLAST of mRNA_Ecto-sp13_S_contig6375.17133.1 vs. uniprot
Match: A0A6H5JR78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.070e-14
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0
Query:   27 LRPSVLTDEISGRLSSAPAPTSSPVCRGHPSPHTGETGFAAAKGGGGAGCVPGATQQTERGET 89
            LR SVL +E S R +SAPAP  SPVCRGH SP TGETGFAAA+GGGGAGCVP AT+QT+ GET
Sbjct: 1058 LRASVLKEESSDRFASAPAPAPSPVCRGHSSPRTGETGFAAARGGGGAGCVPDATRQTKGGET 1120          
BLAST of mRNA_Ecto-sp13_S_contig6375.17133.1 vs. uniprot
Match: D8LK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK33_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.240e-7
Identity = 54/148 (36.49%), Postives = 68/148 (45.95%), Query Frame = 0
Query:  356 QGAALSSGKNDFEISGGALSGGAKRKPPAQPLLRAPSKRGLQNSSSD--------------------------------------NLCCVNAILQLLRHCPQLREGLLAYPTTFSTTNAAVNRSKR----AAKEKREKQLATRGMAVL 461
            QG A SSGK D +ISGG     A    P Q    + S R + ++SS                                       NLCCVNA++QLLRHCPQLREGL AY TT  TT++A   S      AAK  ++K  A +G+A +
Sbjct:  151 QGVAPSSGK-DSDISGGVSPTTAADSSPEQHGEGSDSARAVPDASSTRPGDADAGGTQGCGEGEAPAASGEKATTGGQKGAPNGANLCCVNAVVQLLRHCPQLREGLAAYLTTPLTTSSAGTSSTGDRGGAAKNAKQK-AAAKGVAAM 296          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6375.17133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSR8_ECTSI1.460e-10967.89Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
D7FYB9_ECTSI2.100e-7861.33USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JR78_9PHAE1.070e-1474.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK33_ECTSI7.240e-736.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10coord: 388..487
e-value: 9.9E-7
score: 29.9
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 393..469

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6375contigEcto-sp13_S_contig6375:1953..7840 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6375.17133.1mRNA_Ecto-sp13_S_contig6375.17133.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6375 1953..7840 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6375.17133.1 ID=prot_Ecto-sp13_S_contig6375.17133.1|Name=mRNA_Ecto-sp13_S_contig6375.17133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp
VLRRKITEDTAAAATAAGSSGGGGGGLRPSVLTDEISGRLSSAPAPTSSP
VCRGHPSPHTGETGFAAAKGGGGAGCVPGATQQTERGETGEGSGEGDARI
GGNGGAGAVTPVAGLAVASYGCAATAPSCPVTAGAVTAGAGAVAKKSRNR
DKKPRKHPPQHVSEMREGRKAKKKEKAGEKKRREEKSAARRRGAQQSQPA
SVAADTAKHGGGGGAGATAIVKPEAVPHKTSDELARIAFQRRRGAIHGNG
GTAGRRPSVNTTGFGLGVGSVLQKPSVAAAATTAVTAPPSTAATSPLAAA
ATAPATADAPTPTDGTEAIAAAADTAAPTAAATTAPAAAAAAVAAAATAA
TTTTAQGAALSSGKNDFEISGGALSGGAKRKPPAQPLLRAPSKRGLQNSS
SDNLCCVNAILQLLRHCPQLREGLLAYPTTFSTTNAAVNRSKRAAKEKRE
KQLATRGMAVLMEGMDNSSKRGACHVHPSLADYIYNEDDVSFGRMVLSYR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain-like_cys_pep_sf