prot_Ecto-sp13_S_contig6338.17085.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6338.17085.1
Unique Nameprot_Ecto-sp13_S_contig6338.17085.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length1476
Homology
BLAST of mRNA_Ecto-sp13_S_contig6338.17085.1 vs. uniprot
Match: D7FSE7_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE7_ECTSI)

HSP 1 Score: 1039 bits (2687), Expect = 0.000e+0
Identity = 963/1268 (75.95%), Postives = 977/1268 (77.05%), Query Frame = 0
Query:  133 MREYNKAKRRGENVVRLNYPRSEATPSSTPAAASTXXXXXXXXXXXXXXXXXXXXSFS---WPSSKAGGKIALAPAPSPVTAAVXXXXXXXXXXXXXXMRASSSVPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQPFGEWYCPRCTSFLLDSDSEADDAPXXXXXXXAAAR--VSSTDQRPAEAPSEATATVAAALVXXXXXXTTASERARTRKATAATGSTAVSERAPEKSEGVEAPPAPGPSSDPAVEGSDGAXXXXXXXXXXXXXMATTGRDSSGLXXXXXXXXXXXXXXXXXXXGGGEAGSVADAPAGXXXXXXXXXXXRRLERRSAALRTPADGAEXXXXXXXXXXSVGGGSSAHHGKADAGGRRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRGGGLGVKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGSANKPKPATGRTGTGRPVGRPKGSKNRVVASSPAAIRYGFGSSGREGSESLQRVALPSRRELEVDTNGXXXXXXXXXXXXXXXXXRAGLRSTRGHNTRRFRGGSDDEWSFGGGWASXXXXXXXXXVNYRFGGDKVRRRRRAAGDVSDESYSMSDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPTSKRPPKAAAAAEAGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVGSSEGLPSSGGVNNASAFPVGAPADSAARPSGVAAXXXXXXXXXXXXREAINRKATGDSENRPQQGISSAPVPRAAGPGLPAGXXXXXXXXXXXXXXXXXXXXXDKTRQLVAAVXXXXXXXXXXXXXXXXXPAPAQVREYVFPADLRMGYAAQPVATAATSXXXXXXXXXXXXXXXXXXXXXAVNLSLGTPGKVAVTATPGDSSKAVDPV-KALNQDQRQPAAAAAVAVAPTTVVEQKKTVYPARASTAEALTAVEAKNGVDLAKVATQHREQPAGRPATEAKKAGDDSMSTASKSGRRQLPVLSLGEPKATAVAPSKASPQARQQPAVPA---AAEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVRKKPVGVSPSSSTSVQRQPSAGLSGEPKATVAPSTQTQPALPTAAEAKAAADAPVPEQRQPAAPA 1391
            MREYN+AKRRGENVVRLN+PR EA+PSSTPA    XXXXXXXXXXXXXXXXXXXX      WP SK GGK+ALAP P  VTA      XXXXXXXXXXMRASS VPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCA MSSQPFGEWYCPRCTSFLLDSDSEADDA XXXXXXX      VSSTDQRPAEA SE          XXXXXX                  TAVSE APEK EGVEAPPAPGPSSDPAVEGS   XXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXX              XXXXXXXXXXX                  XXXXXXXXXX                 RRQKRWSLRGDVRGCRCPDCVSILLQ GGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPR GGLG+KRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGS NKPKPATGRTGTGRPVGRPKGSKNRVVASSPAAIRYGFGSSGREGS+SLQRVALPSRRELEVDTN XXXXXXXXXXXXXXXXXRAGLRSTRGHN RRFRGGSD+EWSFGG    XXXXXXXXX   RFGGDKV      AGDVSDESYSM    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 GEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVGSSEGLPSS GVNNASAFPVG PADSAARPSGVAA            REA NRKATGDSENRPQQGI SAPVP AAGPGLPAGXXXXXXXXXXXXXXXXXXXXX KTRQLVAAV                                        V +AA + XXXXXXXXX                          ATPGDSSKAVDPV KA  QDQRQP AAAA  VAPTT V++KKTVYPARASTAEALTAVEAKNGVDLA+V+TQHREQPAGRPA EAKKAGDDSMS ASK  +RQLPVLS GEPKA AVAPSKASPQ RQQPAVPA   AAEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  T  KKPV  SP SSTSVQRQP AGLSGEPKATVAPST           AK  ADAP PEQRQPAAPA
Sbjct:    1 MREYNRAKRRGENVVRLNHPRPEASPSSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPYSKTGGKLALAPTPPSVTA------XXXXXXXXXXMRASSFVPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCARMSSQPFGEWYCPRCTSFLLDSDSEADDAXXXXXXXXXXXXXXVSSTDQRPAEASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVSEPAPEKPEGVEAPPAPGPSSDPAVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXRRQKRWSLRGDVRGCRCPDCVSILLQAGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRRGGLGIKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGS-NKPKPATGRTGTGRPVGRPKGSKNRVVASSPAAIRYGFGSSGREGSDSLQRVALPSRRELEVDTNXXXXXXXXXXXXXXXXXXRAGLRSTRGHNRRRFRGGSDEEWSFGGXXXXXXXXXXXXXXXXRFGGDKVXXXXXXAGDVSDESYSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVGSSEGLPSSVGVNNASAFPVGTPADSAARPSGVAAAATGSISSGGG-REATNRKATGDSENRPQQGIISAPVPHAAGPGLPAGXXXXXXXXXXXXXXXXXXXXXXKTRQLVAAVAA--------------------------------------VVSAAVAPXXXXXXXXX-------------------------AATPGDSSKAVDPVVKASTQDQRQPPAAAAGVVAPTTAVKEKKTVYPARASTAEALTAVEAKNGVDLARVSTQHREQPAGRPAAEAKKAGDDSMS-ASKPDQRQLPVLSPGEPKANAVAPSKASPQTRQQPAVPAVPAAAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATEPKKPVDGSPRSSTSVQRQPPAGLSGEPKATVAPSTXXXXXXXXXXXAKTTADAPAPEQRQPAAPA 1186          
BLAST of mRNA_Ecto-sp13_S_contig6338.17085.1 vs. uniprot
Match: A0A6H5L3S5_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S5_9PHAE)

HSP 1 Score: 927 bits (2396), Expect = 1.750e-313
Identity = 800/1035 (77.29%), Postives = 807/1035 (77.97%), Query Frame = 0
Query:   89 AGEAVAEGQAGGTTISDKHWRRTVSSCEHADAPHYGKGFCRPCYM---------------REYNKAKRRGENVVRLNYPRSEATPSSTPAAASTXXXXXXXXXXXXXXXXXXXXSFSWPSSKAGGKIALAPAPSPVTAAVXXXXXXXXXXXXXXMRASSSVPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQPFGEWYCPRCTSFLLDSDSEADDAPXXXXXXXAAARVSSTDQRPAEAPSEATATVAAALVXXXXXXTTASERARTRKATAATGSTAVSERAPEKSEGVEAPPAPGPSSDPAVEGSDGAXXXXXXXXXXXXXMATTGRDSSGLXXXXXXXXXXXXXXXXXXX-GGGEAGSVADAPAGXXXXXXXXXXXRRLERRSAALRTPADGAEXXXXXXXXXXSVGGGSSAHHGKADAGGRRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRGGGLGVKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGSANKPKPATGRTGTGRPVGRPKGSKNRVVASSPAAIRYGFGSSGREGSESLQRVALPSRRELEVDTNGXXXXXXXXXXXXXXXXXRAGLRSTRGHNTRRFRGGSDDEWSFGGGWASXXXXXXXXXVNYRFGGDKVRRRRRAAGDVSDESYSMSDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPTSKRPPKAAAAAEAGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVGSSEGLPSSGGVNNASAFPVGAPADSAARPSGVAAXXXXXXXXXXXXREAINRKATGDSENRPQQGISSAPVPRAAGPGLPAGXXXXXXXXXXXXXXXXXXXXXDKTRQLVAAVXXXXXXXXXXXXXXXXXPAPAQVREYVFPADLRMGYAAQPVATA 1107
            AGEAV EGQAGGTTISDKHWRRTVSSCEHADAPHYGKGFCRPCYM               REYNKAKRRGENVVRLN PR EA+PSSTPA    XXXXXXXXXXXXXXXXXXXX                          XXXXXXXXXXXXXX       PKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQP GEWYCPRCTSFLLDSDSEADDAPXXXXXXX                          LV      TTASE+ART        S AVSE APEKS+GVEAPPAPGPS DPAVEGS G  XXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXX GGGEAGSVADAPAGXXXXXXXXXXX                  XXXXXXXXXX          GK DAGGRRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPR GGLGVKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGSANKPKPATGRTGTGRPVGRPKGSKNRVVASSPAAIRYGFGSSGREG +SLQRVALPSRRELEVDTN XXXXXXXXXXXXXXXXXRAGLRSTRGHN RRFRGGSDDEWSFGGGWASXXXXXXXXX                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 GEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKREL+EAASRSEGGSVGSSEGLPSSGGVNNASAFPV  PADSAARPSGVAA            REAINRKATGDSENRPQQGI SAP+PRAAGPGLPAGXXXXXXXXXXXXXXX      DKTRQLVA V    XXXXXXXXXX   PAPA VREYVFP DLRMGYAA+PV  A
Sbjct:  175 AGEAVPEGQAGGTTISDKHWRRTVSSCEHADAPHYGKGFCRPCYMVSGEGAKKDRGAFCGREYNKAKRRGENVVRLNCPRPEASPSSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQPCGEWYCPRCTSFLLDSDSEADDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVALAAEATTASEKARTXXXXXXXXSRAVSEPAPEKSQGVEAPPAPGPSFDPAVEGSAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEAGSVADAPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTDAGGRRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRRGGLGVKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGSANKPKPATGRTGTGRPVGRPKGSKNRVVASSPAAIRYGFGSSGREGGDSLQRVALPSRRELEVDTNXXXXXXXXXXXXXXXXXXRAGLRSTRGHNRRRFRGGSDDEWSFGGGWASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------GEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELQEAASRSEGGSVGSSEGLPSSGGVNNASAFPVSIPADSAARPSGVAAAATGSISRGGG-REAINRKATGDSENRPQQGIISAPLPRAAGPGLPAGXXXXXXXXXXXXXXXE-----DKTRQLVAGVAAAVXXXXXXXXXX---PAPAPVREYVFPPDLRMGYAARPVVAA 1186          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6338.17085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSE7_ECTSI0.000e+075.95PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L3S5_9PHAE1.750e-31377.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 244..289
e-value: 3.5E-9
score: 46.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 210..291
e-value: 1.1E-10
score: 43.3
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 245..288
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..1475
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..32
NoneNo IPR availableTMHMMTMhelixcoord: 33..52
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 242..291
score: 9.267
IPR006311Twin-arginine translocation pathway, signal sequencePROSITEPS51318TATcoord: 1..56
score: 8.138
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 232..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6338contigEcto-sp13_S_contig6338:43..6840 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6338.17085.1mRNA_Ecto-sp13_S_contig6338.17085.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6338 43..6840 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6338.17085.1 ID=prot_Ecto-sp13_S_contig6338.17085.1|Name=mRNA_Ecto-sp13_S_contig6338.17085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1476bp
GSADGNASCEPEGGYSGCTTLNHRRRRRSRREILAAAAAAAAAAAAAAAA
STSSQATSSQATSAQATSSQATSSRATLSRATSAQRTTAGEAVAEGQAGG
TTISDKHWRRTVSSCEHADAPHYGKGFCRPCYMREYNKAKRRGENVVRLN
YPRSEATPSSTPAAASTGSPASSAKEGGGGFGGGSSSSFSWPSSKAGGKI
ALAPAPSPVTAAVSAAAVSAAAAATAAMRASSSVPKTTALPPPICGRCKQ
TERSWPSVLVCDGCEATFHLGCAHMSSQPFGEWYCPRCTSFLLDSDSEAD
DAPPPPKEQTAAARVSSTDQRPAEAPSEATATVAAALVALAAEATTASER
ARTRKATAATGSTAVSERAPEKSEGVEAPPAPGPSSDPAVEGSDGAGGGG
SSSSSSSLGMATTGRDSSGLAAGAGAGAAAAAAAAAPTPGGGEAGSVADA
PAGGGDASGAAAAARRLERRSAALRTPADGAEAATGAAAAPKSVGGGSSA
HHGKADAGGRRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVS
EEARSLPAPKIPEGTEHGVVIPRGGGLGVKRRRQRRSPRDPYALKEDRLR
ERETVPAPKRPGRPPGSANKPKPATGRTGTGRPVGRPKGSKNRVVASSPA
AIRYGFGSSGREGSESLQRVALPSRRELEVDTNGGGGLGSASASSGEGGG
GRAGLRSTRGHNTRRFRGGSDDEWSFGGGWASDSDDGGGGGVNYRFGGDK
VRRRRRAAGDVSDESYSMSDSGNSSSGGDGRRRGRKRGRGSAGASTSASA
GAGAGPGGAGGGGGGGGVVVKRGPGRPRKTDCPAGGSGSGSGGGRARGAG
PTSKRPPKAAAAAEAGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRG
QCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVG
SSEGLPSSGGVNNASAFPVGAPADSAARPSGVAAAATSSISGGGGGREAI
NRKATGDSENRPQQGISSAPVPRAAGPGLPAGGGGSGAGGSEASSGGGSA
AAGDKTRQLVAAVAVAAAVPTAAAAAAAAAPAPAQVREYVFPADLRMGYA
AQPVATAATSMATAPPPTPALTPPPPSLAPPAVNLSLGTPGKVAVTATPG
DSSKAVDPVKALNQDQRQPAAAAAVAVAPTTVVEQKKTVYPARASTAEAL
TAVEAKNGVDLAKVATQHREQPAGRPATEAKKAGDDSMSTASKSGRRQLP
VLSLGEPKATAVAPSKASPQARQQPAVPAAAEARASKSGQRQLPVPSPGV
PKATAVAPSKASPQARQQPAVPAATVRKKPVGVSPSSSTSVQRQPSAGLS
GEPKATVAPSTQTQPALPTAAEAKAAADAPVPEQRQPAAPAVRERTKPTD
PPLTSTSVQQRTPLPPSSAAVTAAVLTSSSSPTTTSRAEPTAASAQIETS
LEGASKTGPPTSLASSSSKPVETVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR006311TAT_signal
IPR011011Znf_FYVE_PHD