prot_Ecto-sp13_S_contig63276.17073.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig63276.17073.1
Unique Nameprot_Ecto-sp13_S_contig63276.17073.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length51
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63276.17073.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.350e-15
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0 
Query:    1 CREVFIPRIRPSFCCRTCLKLFHGACVGYSRHKRQSPPPAWICPRCPNGER 51
            C +VF   + PSF CR C KL+H +CVGY+   RQSPPP WICP CP GER
Sbjct:  125 CGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGER 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63276.17073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI3.350e-1560.78PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 13..47
e-value: 5.4E-8
score: 32.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 7..51
e-value: 3.8E-8
score: 35.2
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63276contigEcto-sp13_S_contig63276:347..499 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63276.17073.1mRNA_Ecto-sp13_S_contig63276.17073.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig63276 347..499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig63276.17073.1 ID=prot_Ecto-sp13_S_contig63276.17073.1|Name=mRNA_Ecto-sp13_S_contig63276.17073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
CREVFIPRIRPSFCCRTCLKLFHGACVGYSRHKRQSPPPAWICPRCPNGE
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD