prot_Ecto-sp13_S_contig6302.17046.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6302.17046.1
Unique Nameprot_Ecto-sp13_S_contig6302.17046.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length117
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6302.17046.1 vs. uniprot
Match: A0A6H5KIY2_9PHAE (SEC7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY2_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.580e-37
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = 0 
Query:    9 QAFQGGVGSVGGVTAKAGEKDGAEADGKGGDADASAKQERRPKDSLSITLPESSLGLSKKKPSAAA-----GGETTDWLSDLKIAFGVSTTTSTSRNGSAEDIKAAAGDETGTG 117
            +A QGG+G VG V AKAGEKDGAEADGKGGDADASAKQ RR KDSLSITLPESSLG  K KPSA       GGETTDWLSDLKIAFGVSTT++TS+N +++DIKAA GDETG G
Sbjct:  629 RALQGGIG-VGDVAAKAGEKDGAEADGKGGDADASAKQGRRAKDSLSITLPESSLGSPKNKPSAXXXXXXXGGETTDWLSDLKIAFGVSTTSTTSKNRTSKDIKAATGDETGVG 741
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BLAST of mRNA_Ecto-sp13_S_contig6302.17046.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.500e-23
Identity = 66/100 (66.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   21 VTAKAGEKDGAEADGKGGDADASAKQERRPKDSLSITLPESSLGLSKKKPSAAAG---GETTDWLSDLKIAFGVSTTTSTSRNGSAEDIKAAAGDETGTG 117
            +T KAGEKD AE            KQERR KDSLSITLPESSLG  KK          GETTDWLSDLKIAFGVSTTT+T +NGS++DIKA AGDETGTG
Sbjct: 1106 ITEKAGEKDSAEXXXXXXXXXXXXKQERRAKDSLSITLPESSLGSPKKXXXXXXXXXXGETTDWLSDLKIAFGVSTTTTTRKNGSSKDIKAVAGDETGTG 1205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6302.17046.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIY2_9PHAE4.580e-3776.32SEC7 domain-containing protein (Fragment) n=1 Tax=... [more]
D8LFA1_ECTSI4.500e-2366.00BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6302contigEcto-sp13_S_contig6302:6524..6874 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6302.17046.1mRNA_Ecto-sp13_S_contig6302.17046.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6302 6496..6874 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6302.17046.1 ID=prot_Ecto-sp13_S_contig6302.17046.1|Name=mRNA_Ecto-sp13_S_contig6302.17046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MTATAPSPQAFQGGVGSVGGVTAKAGEKDGAEADGKGGDADASAKQERRP
KDSLSITLPESSLGLSKKKPSAAAGGETTDWLSDLKIAFGVSTTTSTSRN
GSAEDIKAAAGDETGTG
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