prot_Ecto-sp13_S_contig6266.16995.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6266.16995.1
Unique Nameprot_Ecto-sp13_S_contig6266.16995.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length408
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6266.16995.1 vs. uniprot
Match: A0A6H5KZM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM8_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 2.850e-121
Identity = 296/347 (85.30%), Postives = 304/347 (87.61%), Query Frame = 0 
Query:   58 TIGRTERKYLQSETRVITPALTISSIPVVYGYYVDGYGYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTSYDDDIDSSTYFSSLDDDSFTFLRANDTNASSPSFSAGFLNIYILQGSYSFITIEDIDPLDVGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFYTKRGND-VIRRLSATSSTSKSPDASQGATEVREQLPDWEDERNGRQGEAEGKAEGETPAIPSSKNPTPSMIRRRSSNEDREICGSQRATSVVVEGEPV 403
            TIGRTERKYL SE+RVITPALTISSIPVVYGYYVDGYGYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                        TSYDD +DS TYFS LDDDSFTFLRA+DT+ASSPSFS GFLNIY+LQGSYS I IEDIDPLD+GDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFYTKRG D +IRRLSATSSTSKSPDASQGATEVREQ PDWEDERNG QGEAEGK+EGETPAIPS KNPTP MIR RSS EDRE   SQR TSVVVEGEPV
Sbjct:    6 TIGRTERKYLLSESRVITPALTISSIPVVYGYYVDGYGYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDT----------------------TSYDDGVDSWTYFSGLDDDSFTFLRADDTSASSPSFSGGFLNIYVLQGSYSLIIIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFYTKRGTDEIIRRLSATSSTSKSPDASQGATEVREQPPDWEDERNGGQGEAEGKSEGETPAIPSLKNPTPFMIRGRSSTEDRETRRSQRPTSVVVEGEPV 330
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6266.16995.1 vs. uniprot
Match: D7FTW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW9_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 5.350e-91
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0 
Query:  245 LNIYILQGSYSFITIEDIDPLDVGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFYTKRGNDVIRR-LSATSSTSKSPDASQGATEVREQLPDWEDERNGRQGEAEGKAEGETPAIPSSKNPTPSMIRRRSSNEDREICGSQRATSVVVEGEPVGVMG 407
            LNIYILQGSYSFITIEDIDPLD+GDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFYTKRG + +RR LSATSSTSKSPDASQGATEVREQLPDW DERNG +GEAEGK+E ETPAIPS KNPTPSMIRRRSSNEDRE CG Q  TSVVVEGEP GVMG
Sbjct:    2 LNIYILQGSYSFITIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFYTKRGTEEMRRRLSATSSTSKSPDASQGATEVREQLPDWADERNGGEGEAEGKSEVETPAIPSLKNPTPSMIRRRSSNEDRETCGIQGTTSVVVEGEPRGVMG 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6266.16995.1 vs. uniprot
Match: D7G5W1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.900e-5
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0 
Query:  234 NASSPSFSAGFLNIYILQGSYSFITIEDIDPLDVGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAF 305
            N SS +    F+++ I QG  S  TI +  P+ +G+LLG+IGGFW  +LL + VFF V   E+ P L+ R F
Sbjct:  125 NISSITRPYAFIDLRIKQGPNSLETITEDAPVTIGELLGDIGGFWDILLLLWPVFFVVVSQEE-PTLKPRNF 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6266.16995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZM8_9PHAE2.850e-12185.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTW9_ECTSI5.350e-9189.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5W1_ECTSI3.900e-543.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 292..407

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6266contigEcto-sp13_S_contig6266:73..6762 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6266.16995.1mRNA_Ecto-sp13_S_contig6266.16995.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6266 73..6762 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6266.16995.1 ID=prot_Ecto-sp13_S_contig6266.16995.1|Name=mRNA_Ecto-sp13_S_contig6266.16995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=408bp
MSWISSDNSSLDDTASPILDVYLSSEEGGIQEYVTLPYTRNVFPIEFEEL
HLEEIQLTIGRTERKYLQSETRVITPALTISSIPVVYGYYVDGYGYDDDY
FDDDDYDDDNGDDDDDDNGDDGGDDDNDDGGDDDDDGDDKSTRSSMSSVE
YTTTSSTESSSTFSPSEESTTPPGASRQRRQRRQRRRLVSSSSSSSSSSS
TSDYTSYDDDIDSSTYFSSLDDDSFTFLRANDTNASSPSFSAGFLNIYIL
QGSYSFITIEDIDPLDVGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRL
RARAFYTKRGNDVIRRLSATSSTSKSPDASQGATEVREQLPDWEDERNGR
QGEAEGKAEGETPAIPSSKNPTPSMIRRRSSNEDREICGSQRATSVVVEG
EPVGVMG*
back to top