prot_Ecto-sp13_S_contig62449.16973.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig62449.16973.1
Unique Nameprot_Ecto-sp13_S_contig62449.16973.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length38
Homology
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: D1J759_ECTSI (Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J759_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.050e-16
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL
Sbjct:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: B7T220_VAULI (Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T220_VAULI)

HSP 1 Score: 65.1 bits (157), Expect = 2.430e-13
Identity = 29/37 (78.38%), Postives = 37/37 (100.00%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEPLLFG+VLG++PVT+IGLF+AA+LQYRRGN++GL
Sbjct:    1 MIEPLLFGIVLGIVPVTIIGLFIAAYLQYRRGNQIGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: PETG_GUITH (Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryota TaxID=2759 RepID=PETG_GUITH)

HSP 1 Score: 64.7 bits (156), Expect = 3.460e-13
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEPLLFG+VLGLIPVTL GLFVAA+LQYRRGN+ GL
Sbjct:    1 MIEPLLFGIVLGLIPVTLTGLFVAAYLQYRRGNQFGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: W0RYK9_PORPP (Cytochrome b6-f complex subunit 5 n=15 Tax=cellular organisms TaxID=131567 RepID=W0RYK9_PORPP)

HSP 1 Score: 64.3 bits (155), Expect = 4.920e-13
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            M+EPLL G++LGLIPVTLIGLFVAA+LQYRRGN+LGL
Sbjct:    1 MVEPLLSGIILGLIPVTLIGLFVAAYLQYRRGNQLGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: B2XT41_HETAK (Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT41_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 4.920e-13
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEPLLFG+VLG+IPVTL GLFVAA+LQY+RGN+LGL
Sbjct:    1 MIEPLLFGIVLGMIPVTLTGLFVAAYLQYKRGNQLGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: A0A1C9CFS4_9FLOR (Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CFS4_9FLOR)

HSP 1 Score: 63.9 bits (154), Expect = 6.990e-13
Identity = 30/37 (81.08%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEPLLFG+VLGLIP+TL+GLFVAA+LQ+RR NKLG+
Sbjct:    1 MIEPLLFGIVLGLIPITLLGLFVAAYLQFRRANKLGI 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: K8GJW3_9CYAN (Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria TaxID=2 RepID=K8GJW3_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEP+L G+VLGLIPVTL GLFVAA+LQYRRGN+LGL
Sbjct:    1 MIEPILLGIVLGLIPVTLAGLFVAAYLQYRRGNELGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: A0A098TN63_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TN63_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12
Identity = 30/37 (81.08%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            M+EPLL G+V+GLIPVTL+GLFVAA+LQYRRGN+LGL
Sbjct:    1 MVEPLLTGIVMGLIPVTLLGLFVAAYLQYRRGNQLGL 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: M1K3W3_DIALT (Cytochrome b6-f complex subunit 5 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3W3_DIALT)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            M+EPLL G+VLGLIPVT +GLFVAAFLQYRRGN+LG+
Sbjct:    1 MVEPLLSGIVLGLIPVTALGLFVAAFLQYRRGNQLGI 37          
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Match: PETG_SYNP2 (Cytochrome b6-f complex subunit 5 n=6 Tax=Cyanobacteria TaxID=1117 RepID=PETG_SYNP2)

HSP 1 Score: 61.2 bits (147), Expect = 8.340e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0
Query:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
            MIEPLL G+VLGLIPVTL GLFVAA+LQY+RGN LG+
Sbjct:    1 MIEPLLLGIVLGLIPVTLAGLFVAAYLQYKRGNDLGM 37          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62449.16973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J759_ECTSI3.050e-16100.00Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeoph... [more]
B7T220_VAULI2.430e-1378.38Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheri... [more]
PETG_GUITH3.460e-1386.49Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryo... [more]
W0RYK9_PORPP4.920e-1383.78Cytochrome b6-f complex subunit 5 n=15 Tax=cellula... [more]
B2XT41_HETAK4.920e-1383.78Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosi... [more]
A0A1C9CFS4_9FLOR6.990e-1381.08Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbr... [more]
K8GJW3_9CYAN1.410e-1283.78Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria... [more]
A0A098TN63_9CYAN1.410e-1281.08Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynec... [more]
M1K3W3_DIALT2.850e-1281.08Cytochrome b6-f complex subunit 5 n=2 Tax=Pavlovac... [more]
PETG_SYNP28.340e-1281.08Cytochrome b6-f complex subunit 5 n=6 Tax=Cyanobac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003683Cytochrome b6/f complex, subunit 5PFAMPF02529PetGcoord: 1..36
e-value: 1.1E-23
score: 82.8
IPR003683Cytochrome b6/f complex, subunit 5PIRSFPIRSF000034Cytochrome_b6f_V/PetGcoord: 1..37
e-value: 1.7E-22
score: 76.8
IPR003683Cytochrome b6/f complex, subunit 5PANTHERPTHR35516FAMILY NOT NAMEDcoord: 1..37
IPR003683Cytochrome b6/f complex, subunit 5HAMAPMF_00432Cytb6_f_PetGcoord: 1..36
score: 17.982
NoneNo IPR availablePANTHERPTHR35516:SF2coord: 1..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR036099Cytochrome b6/f complex, subunit 5 superfamilySUPERFAMILY103446PetG subunit of the cytochrome b6f complexcoord: 1..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62449contigEcto-sp13_S_contig62449:301..414 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62449.16973.1mRNA_Ecto-sp13_S_contig62449.16973.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig62449 301..414 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig62449.16973.1 ID=prot_Ecto-sp13_S_contig62449.16973.1|Name=mRNA_Ecto-sp13_S_contig62449.16973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003683Cyt_6/f_cplx_su5
IPR036099Cyt_6/f_cplx_su5_sf