prot_Ecto-sp13_S_contig6233.16960.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6233.16960.1
Unique Name	prot_Ecto-sp13_S_contig6233.16960.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	92

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5KQX7_9PHAE (HTH psq-type domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX7_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.850e-53
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEEQVRKACAAID GMSVRKAAG FGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.890e-52
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEEQVRKACAAID GMSVRKAAG FGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.380e-49
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEEQVRKACAAID GMSVRKAAG FGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: D7G6G3_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G3_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.420e-46
Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            M RRKVDEEQVRKACAAID GMSVRKAA  FGVGRTSI DRRRGKVAMN KVG ETILSKEEEDSLE ILLFAARN LAV RVHLRDAVRRL
Sbjct:    1 MIRRKVDEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIADRRRGKVAMNTKVGPETILSKEEEDSLEHILLFAARNLLAVDRVHLRDAVRRL 92

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.460e-44
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEE+VRKA AAID GMSVRKAA  FGVGRTSIEDRRRGKVAMNAKVG ETILS+EEEDSLEDILL AARNFLAV RVHLRDAVRRL
Sbjct:    1 MTRRKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRL 92

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5JRN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN0_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.280e-43
Identity = 83/97 (85.57%), Postives = 83/97 (85.57%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAA-----GTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEEQVRKA AAI  GMSVRKAA       FGVG  SIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILLFAARNFLAV RVHLRDAVRRL
Sbjct:    1 MTRRKVDEEQVRKAYAAIGDGMSVRKAAXGLLRSFFGVGHMSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLFAARNFLAVDRVHLRDAVRRL 97

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.700e-43
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTR KVDEE+VRKA AAID GMSVRKAA  FGVGRTSIEDRRRGKVAMNAKVG ETILS+EEEDSLEDILL AARNFLAV RVHLRDAVRRL
Sbjct:    1 MTRCKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRL 92

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5JSC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 8.750e-43
Identity = 80/92 (86.96%), Postives = 81/92 (88.04%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEEQVRKACAAID  MS R AA  FG+GRTSIEDRRRGKVAMNAKVG ETILS EEED LEDILLFAARNFLAV RVHLR AVRRL
Sbjct:    1 MTRRKVDEEQVRKACAAIDDDMSDR-AAEVFGLGRTSIEDRRRGKVAMNAKVGPETILSNEEEDPLEDILLFAARNFLAVDRVHLRGAVRRL 91

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BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 8.980e-43
Identity = 83/92 (90.22%), Postives = 84/92 (91.30%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL 92
            MTRRKVDEEQVRKACAAID GMSVRKAA  FGVGRTSI DRRRGK AMNAKVG ETILSKEEEDSLE ILLFAARNFLAV RV+LRDAVRRL
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIVDRRRGKAAMNAKVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRL 92

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Match: A0A6H5KU58_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU58_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.490e-40
Identity = 74/84 (88.10%), Postives = 76/84 (90.48%), Query Frame = 0

Query:    1 MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVH 84
            MTR KVDEEQVRKACAAID G SVRKAA  FGVGRTSIEDRRRGKVAMNAKVG +TILSKEEEDS+ DILLFAARNFLAV RVH
Sbjct:    1 MTRCKVDEEQVRKACAAIDDGTSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPKTILSKEEEDSVGDILLFAARNFLAVDRVH 84

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6233.16960.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KQX7_9PHAE	2.850e-53	97.83	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JRY4_9PHAE	1.890e-52	97.83	HTH psq-type domain-containing protein n=4 Tax=Ect...	[more]
A0A6H5JFM5_9PHAE	3.380e-49	97.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6G3_ECTSI	5.420e-46	89.13	Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KJ62_9PHAE	6.460e-44	90.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRN0_9PHAE	1.280e-43	85.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K547_9PHAE	2.700e-43	89.13	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5JSC6_9PHAE	8.750e-43	86.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRA3_9PHAE	8.980e-43	90.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KU58_9PHAE	1.490e-40	88.10	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007889	DNA binding HTH domain, Psq-type	PFAM	PF05225	HTH_psq	coord: 8..46 e-value: 2.5E-6 score: 27.1
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 3..53

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6233	contig	Ecto-sp13_S_contig6233:1134..1409 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6233.16960.1	mRNA_Ecto-sp13_S_contig6233.16960.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6233 1134..1409 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6233.16960.1 ID=prot_Ecto-sp13_S_contig6233.16960.1|Name=mRNA_Ecto-sp13_S_contig6233.16960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MTRRKVDEEQVRKACAAIDGGMSVRKAAGTFGVGRTSIEDRRRGKVAMNA
KVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007889	HTH_Psq
IPR009057	Homeobox-like_sf