prot_Ecto-sp13_S_contig6182.16883.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6182.16883.1
Unique Nameprot_Ecto-sp13_S_contig6182.16883.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length133
Homology
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: D8LDH8_ECTSI (Rab11C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH8_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 7.510e-83
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0
Query:    1 MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGCPSAAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            MVRVV+QMSA+CMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK  GCPSAAVGMQFGTR LRYSDSLSVRAQIWDTAGTF FKSVKDA+FGGTVG MLVYDIS RSTFDDLARWLSLVRENSHKSV
Sbjct:    1 MVRVVDQMSASCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKKSGCPSAAVGMQFGTRTLRYSDSLSVRAQIWDTAGTFAFKSVKDAFFGGTVGVMLVYDISKRSTFDDLARWLSLVRENSHKSV 133          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A6H5KEC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC4_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 2.030e-78
Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = 0
Query:    1 MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGCPSAAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK GG PSAAVGMQFGTR LRYSDSLSVRAQIWDTAGT  FK VKDAYF GTVGA+LVYDISNRSTFDDLARWLSLVRENSHKSV
Sbjct:    1 MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKKGGRPSAAVGMQFGTRTLRYSDSLSVRAQIWDTAGTLHFKCVKDAYFEGTVGALLVYDISNRSTFDDLARWLSLVRENSHKSV 133          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A835YTB2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.940e-27
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 0
Query:   25 VYTLKFVLVGSRGVGKTRLASLFHRKNGGCP--SAAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            VYTLKFVLVG   VGK++L S F  KN   P  S+ VGM+F TR L Y     ++AQ+WDTAG   F S+  AY+ G VGA+LVYD+++R++F+   RWL  +R+N+H+++
Sbjct:   17 VYTLKFVLVGDSSVGKSQLVSRFS-KNLFLPETSSTVGMEFATRELAYYGGARLKAQVWDTAGQERFHSLTQAYYRGAVGALLVYDVTSRASFEGARRWLRQIRDNAHRNI 126          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A4D9DGX6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGX6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.890e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 0
Query:   26 YTLKFVLVGSRGVGKTRLASLFHRKNGGCPS-AAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            Y  K VL+G  GVGK+ L S F R      S + +G++F T++++ +D   ++AQIWDTAG   ++++  AY+ G VGA+LVYDIS R TFD++ RWL  +RE++ +S+
Sbjct:   11 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSI 119          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A8B7C5R4_PHODC (ras-related protein RIC2-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7C5R4_PHODC)

HSP 1 Score: 101 bits (251), Expect = 5.240e-24
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 0
Query:   17 SYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGCPS-AAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            +Y S  D  Y  K VL+G  GVGK+ L S F R      S + +G++F TR+L   DS  ++AQIWDTAG   ++++  AY+ G VGA+LVYD++ RSTF+ + RWL  +R+++  SV
Sbjct:    4 AYRSEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLTV-DSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRSTFESVERWLKELRDHTDPSV 120          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A6P5WXK1_DURZI (ras-related protein RABA1c-like n=2 Tax=rosids TaxID=71275 RepID=A0A6P5WXK1_DURZI)

HSP 1 Score: 101 bits (251), Expect = 5.480e-24
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 0
Query:   13 MAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGCPS-AAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            MAG SY    D  Y  K VL+G  GVGK+ L S F R      S + +G++F TR+L   D   ++AQIWDTAG   ++++  AY+ G VGA+LVYD++  STF+++ RWL  +R+++  ++
Sbjct:    1 MAGYSYRPEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSLNV-DGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVGRWLRELRDHTDPNI 121          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: I1HRK7_BRADI (Uncharacterized protein n=13 Tax=Pooideae TaxID=147368 RepID=I1HRK7_BRADI)

HSP 1 Score: 101 bits (251), Expect = 5.740e-24
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   17 SYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGC--PSAAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            +Y +  D  Y  K V++G  GVGK+ L S F  KN  C    + +G++F TR+L+  D   V+AQIWDTAG   ++++  AY+ G VGA+LVYD++ RSTFD++ARWL  +R+++  S+
Sbjct:    9 AYRAEDDYDYLFKAVIIGDSGVGKSNLLSRF-TKNEFCLESKSTIGVEFATRSLQV-DGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRSTFDNVARWLKELRDHTDPSI 125          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A8J5S487_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S487_ZIZPA)

HSP 1 Score: 100 bits (249), Expect = 6.850e-24
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   15 GCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGCPS-AAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            G  Y +  D  Y  K VL+G  GVGK+ L S F +      S + +G++F TR+L+  D   ++AQIWDTAG   ++++  AY+ G VGA+LVYD++ R+TFD +ARWL  +R+++  S+
Sbjct:    5 GGGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLQV-DGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFDSVARWLRELRDHTDPSI 123          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: A0A1U8NLS9_GOSHI (ras-related protein RABA1f-like n=17 Tax=Gossypium TaxID=3633 RepID=A0A1U8NLS9_GOSHI)

HSP 1 Score: 100 bits (250), Expect = 7.220e-24
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 0
Query:   17 SYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGCPS-AAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            +Y +  D  Y  K VLVG  GVGK+ L S F R      S + +G++F TR++R +D + V+AQIWDTAG   ++++  AY+ G VGAMLVYD++ R TF++  RWL  +R+++  S+
Sbjct:    3 AYRADDDYDYLFKVVLVGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVNDKI-VKAQIWDTAGQERYRAITSAYYRGAVGAMLVYDVTRRVTFENGQRWLKELRDHTDSSI 119          
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Match: Q94J09_ORYSJ (GTP-binding protein GTP1 n=13 Tax=Oryzinae TaxID=1648021 RepID=Q94J09_ORYSJ)

HSP 1 Score: 100 bits (250), Expect = 7.900e-24
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = 0
Query:   15 GCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGC--PSAAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGTVGAMLVYDISNRSTFDDLARWLSLVRENSHKSV 133
            G  Y +  D  Y  K VL+G  GVGK+ L S F  KN  C    + +G++F TR+++  D   V+AQIWDTAG   ++++  AY+ G VGA+LVYD++ R+TFD++ARWL  +R+++  S+
Sbjct:    6 GGGYRAEDDYDYLFKTVLIGDSGVGKSNLLSRF-TKNEFCLESKSTIGVEFATRSIQV-DGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFDNVARWLKELRDHTDPSI 124          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6182.16883.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH8_ECTSI7.510e-8393.23Rab11C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KEC4_9PHAE2.030e-7893.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTB2_9STRA5.940e-2749.55Ras family-domain-containing protein n=1 Tax=Tribo... [more]
A0A4D9DGX6_9STRA2.890e-2444.04Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8B7C5R4_PHODC5.240e-2444.07ras-related protein RIC2-like n=1 Tax=Phoenix dact... [more]
A0A6P5WXK1_DURZI5.480e-2441.80ras-related protein RABA1c-like n=2 Tax=rosids Tax... [more]
I1HRK7_BRADI5.740e-2443.70Uncharacterized protein n=13 Tax=Pooideae TaxID=14... [more]
A0A8J5S487_ZIZPA6.850e-2441.67Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A1U8NLS9_GOSHI7.220e-2443.22ras-related protein RABA1f-like n=17 Tax=Gossypium... [more]
Q94J09_ORYSJ7.900e-2442.98GTP-binding protein GTP1 n=13 Tax=Oryzinae TaxID=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 28..49
score: 40.82
coord: 69..91
score: 34.36
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 28..133
e-value: 9.8E-7
score: -25.6
NoneNo IPR availableGENE3D3.40.50.300coord: 16..133
e-value: 8.2E-24
score: 85.8
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 26..129
NoneNo IPR availablePANTHERPTHR24073:SF350RAS-RELATED PROTEIN RABA4Acoord: 26..129
NoneNo IPR availablePROSITEPS51419RABcoord: 23..133
score: 12.547
IPR001806Small GTPasePFAMPF00071Rascoord: 29..130
e-value: 1.0E-18
score: 67.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 26..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6182contigEcto-sp13_S_contig6182:199..5635 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6182.16883.1mRNA_Ecto-sp13_S_contig6182.16883.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6182 199..5635 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6182.16883.1 ID=prot_Ecto-sp13_S_contig6182.16883.1|Name=mRNA_Ecto-sp13_S_contig6182.16883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK
NGGCPSAAVGMQFGTRALRYSDSLSVRAQIWDTAGTFPFKSVKDAYFGGT
VGAMLVYDISNRSTFDDLARWLSLVRENSHKSV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase