prot_Ecto-sp13_S_contig6174.16871.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6174.16871.1
Unique Nameprot_Ecto-sp13_S_contig6174.16871.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length140
Homology
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A6H5KRW8_9PHAE (Ribosom_S30AE_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRW8_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.140e-80
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 0
Query:    1 MVARRFCLIAAVGNCSLATGFHFRAPLSSTGLGTAQQQWSAPAQTTPRRSNLVPLQQAVAEATSRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATDN 138
            MVARR+CLIAAVGNCSLA GFH RAPLSSTGLGTAQQQWSAPAQT PRRSNLVPLQ AVAEATSRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVS+NHNTEVTVFSKNHVIRATDN
Sbjct:    1 MVARRYCLIAAVGNCSLAMGFHVRAPLSSTGLGTAQQQWSAPAQTAPRRSNLVPLQ-AVAEATSRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSDNHNTEVTVFSKNHVIRATDN 137          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A835ZQC8_9STRA (Ribosomal protein rpS22, plastidal n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQC8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.240e-19
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 0
Query:   64 SRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATD 137
            S R P+++TGNN++VT  L +YV KKM KV++K+G  V+KVDVHLSVNKNP +++ H  EVT ++K  +IRAT+
Sbjct:   61 SARKPVLITGNNIDVTPALMDYVNKKMDKVVEKLGGVVTKVDVHLSVNKNPRIADGHVAEVTCYAKGTIIRATE 134          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A835ZBG9_9STRA (Ribosomal protein S30Ae/sigma 54 modulation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.220e-18
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 0
Query:   64 SRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATD 137
            S R P+++TGNN+++T  L EYV KKM KV++K+G  V+KVDVHLSVN+NP V+++H  EVTVF+K   +RA +
Sbjct:   60 STRKPVLITGNNIDLTPALNEYVNKKMDKVVEKLGGVVTKVDVHLSVNRNPRVADSHIAEVTVFAKGATLRAAE 133          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A6V1KPF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KPF4_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 1.760e-18
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 0
Query:   64 SRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATD 137
            S + PI+VTGNN+++T  +KEYVEKKM  VL KVG  V+KVD HL+V++NP +  +H  E+TV++K  V+RAT+
Sbjct:   46 SDKKPILVTGNNIDMTPSIKEYVEKKMNNVLSKVGGDVTKVDCHLTVDQNPRIENSHKAEITVYTKGAVVRATE 119          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A6T8LT77_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8LT77_HEMAN)

HSP 1 Score: 78.2 bits (191), Expect = 8.360e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0
Query:   68 PIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATDN 138
            PI+++GNN+EVT  +K+YV KK  K LDKVG  V+K DVHL  ++NP++S  ++ EVT+F+K   IRA  N
Sbjct:   49 PILISGNNIEVTPAIKDYVNKKFGKALDKVGKQVTKCDVHLIYDQNPAISTPNHVEVTLFAKGATIRAHKN 119          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A7S2CSI1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSI1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.490e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0
Query:   66 RAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATD 137
            R PIIVTGNNVEVT  + EYV KK+ KVLDK    V+K DVHL+V  NP V E+H  EVT+  K  V+R ++
Sbjct:   50 RQPIIVTGNNVEVTPAMLEYVNKKLDKVLDKHRQVVTKCDVHLTVVHNPRVKESHRAEVTLAVKGLVMRTSE 121          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A7S4NDC7_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NDC7_GUITH)

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-13
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   48 RRSNLVPLQQAVAEATSRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRAT 136
            RRS +VP+  +       + PI ++GNNVE+T  LK+Y+ +K+   L KVG  V++ D HL+V+KNPSV  N N EV V  K  V+RA+
Sbjct:   67 RRSVVVPVMSSAV-----KIPITISGNNVELTPALKQYINEKLTNTLSKVGRLVTRCDAHLTVDKNPSVENNANFEVVVSVKGTVMRAS 150          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: M2VVK1_GALSU (Plastid-specific ribosomal protein PSRP-1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VVK1_GALSU)

HSP 1 Score: 75.1 bits (183), Expect = 1.770e-13
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0
Query:   69 IIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATD 137
            I+VTGNN+E+TE L +YVE+K+ K + K    V KV+VHLSV  NPS+   H +EVTVF++ HV+RA++
Sbjct:   70 IVVTGNNIELTEALHKYVEEKVGKAILKYIHFVVKVEVHLSVAHNPSIKLRHTSEVTVFARKHVLRASE 138          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: A0A7S0GFH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFH7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.430e-13
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 0
Query:   68 PIIVTGNNVEVTEPLKEYVEKKMAKVLDKV--GSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATD 137
            PII+TGNN+EVT  L +YV +K+ + + K   G SV++ DVHLSVNKNP VSE H  EV    K   IRA +
Sbjct:   42 PIIITGNNIEVTPSLMDYVNEKVDRTIGKFAFGGSVTECDVHLSVNKNPKVSEGHKAEVVASLKGLTIRAAE 113          
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Match: L1J9F8_GUITC (Ribosom_S30AE_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J9F8_GUITC)

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-12
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   66 RAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRAT 136
            + PI ++GNNVE+T  LK+Y+ +K+   L KVG  V++ D HL+V+KNPSV  N N EV V  K  V+RA+
Sbjct:    6 KIPITISGNNVELTPALKQYINEKLTNTLSKVGRLVTRCDAHLTVDKNPSVENNANFEVVVSVKGTVMRAS 76          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6174.16871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRW8_9PHAE1.140e-8095.65Ribosom_S30AE_C domain-containing protein n=2 Tax=... [more]
A0A835ZQC8_9STRA6.240e-1955.41Ribosomal protein rpS22, plastidal n=1 Tax=Tribone... [more]
A0A835ZBG9_9STRA1.220e-1855.41Ribosomal protein S30Ae/sigma 54 modulation protei... [more]
A0A6V1KPF4_HETAK1.760e-1854.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6T8LT77_HEMAN8.360e-1552.11Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2CSI1_9STRA8.490e-1456.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4NDC7_GUITH1.500e-1344.94Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
M2VVK1_GALSU1.770e-1353.62Plastid-specific ribosomal protein PSRP-1 n=1 Tax=... [more]
A0A7S0GFH7_9STRA3.430e-1352.78Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
L1J9F8_GUITC1.700e-1249.30Ribosom_S30AE_C domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003489Ribosome hibernation promoting factor/RaiATIGRFAMTIGR00741TIGR00741coord: 69..137
e-value: 3.1E-12
score: 44.9
IPR003489Ribosome hibernation promoting factor/RaiAPFAMPF02482Ribosomal_S30AEcoord: 69..137
e-value: 2.3E-11
score: 44.3
IPR036567Ribosome hibernation promotion factor-likeGENE3D3.30.160.100coord: 68..139
e-value: 4.3E-13
score: 51.5
IPR036567Ribosome hibernation promotion factor-likeSUPERFAMILY69754Ribosome binding protein Y (YfiA homologue)coord: 69..137
NoneNo IPR availablePANTHERPTHR33231FAMILY NOT NAMEDcoord: 69..137
NoneNo IPR availablePANTHERPTHR33231:SF5coord: 69..137
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6174contigEcto-sp13_S_contig6174:87..4112 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6174.16871.1mRNA_Ecto-sp13_S_contig6174.16871.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6174 87..4112 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6174.16871.1 ID=prot_Ecto-sp13_S_contig6174.16871.1|Name=mRNA_Ecto-sp13_S_contig6174.16871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MVARRFCLIAAVGNCSLATGFHFRAPLSSTGLGTAQQQWSAPAQTTPRRS
NLVPLQQAVAEATSRRAPIIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSS
VSKVDVHLSVNKNPSVSENHNTEVTVFSKNHVIRATDNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003489RHF/RaiA
IPR036567RHF-like