prot_Ecto-sp13_S_contig6136.16823.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6136.16823.1
Unique Nameprot_Ecto-sp13_S_contig6136.16823.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length98
Homology
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 4.770e-42
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0
Query:    1 MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAK KDV
Sbjct:    1 MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKTKDV 76          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.440e-39
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0
Query:    1 MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            MADHRDFLGAIVNLGVTRDGIGDILVQGERGA VLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAK KDV
Sbjct:  170 MADHRDFLGAIVNLGVTRDGIGDILVQGERGAHVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKTKDV 245          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A845X2R8_9CYAN (Photosystem II S4 domain protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X2R8_9CYAN)

HSP 1 Score: 93.6 bits (231), Expect = 3.130e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A+HRDFLGAI+N GV RD +GDILV G+RGAQ+LV P + EF   SL  VRSV VKV+PI L EL +RP K K++
Sbjct:  103 ANHRDFLGAILNTGVVRDKVGDILVLGDRGAQILVVPELVEFFQQSLLQVRSVPVKVQPIELSELKIRPPKRKEI 177          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A251WKT0_9CYAN (Photosystem II S4 domain protein n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WKT0_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 1.740e-20
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A HRDFLGA++  G+ RD +GDI+V GERGAQ +V P +AEFLA  LT VRSV VK RPIPL EL +R  K K++
Sbjct:  104 ATHRDFLGAMLGTGIVRDKVGDIIVLGERGAQAIVVPELAEFLAMQLTQVRSVPVKTRPIPLTELKIREPKKKEL 178          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A2W7D4B6_9CYAN (Photosystem II S4 domain protein n=1 Tax=Snowella sp. TaxID=2164131 RepID=A0A2W7D4B6_9CYAN)

HSP 1 Score: 90.9 bits (224), Expect = 3.370e-20
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A+HRDFLGAI+N GV R+ +GDIL  GERGAQ++V P M EF   SL  VRSV VKV+PI L+EL +RP + K++
Sbjct:  103 ANHRDFLGAILNTGVVREKVGDILTLGERGAQIIVVPEMVEFFQVSLQQVRSVPVKVQPITLDELKIRPPQKKEI 177          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: UPI0019F7DA76 (Photosystem II S4 domain protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019F7DA76)

HSP 1 Score: 90.9 bits (224), Expect = 3.370e-20
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A HRDFLGAI+  G+ RD IGDI+V GERGAQV+V P M +FL  SLT VRSV VK +PI L EL VRP + K++
Sbjct:  103 ATHRDFLGAILGTGIVRDKIGDIIVLGERGAQVIVVPEMVDFLQTSLTQVRSVTVKTQPIELSELKVRPPQKKEM 177          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A8J7JD65_9CYAN (Photosystem II S4 domain protein n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7JD65_9CYAN)

HSP 1 Score: 90.9 bits (224), Expect = 3.430e-20
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A HRDFLGAI+  GVTR+ IGDILV GERGAQ++V P + EFL  +L  VRSV VK +PI L EL VRP + K++
Sbjct:  104 ATHRDFLGAILGTGVTREKIGDILVLGERGAQIIVVPELVEFLGANLVQVRSVPVKTQPIELSELKVRPPQKKEI 178          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A563VPY8_9CYAN (Photosystem II S4 domain protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VPY8_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 9.320e-20
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A HRDFLG+I+  G+TRD +GDILV GERGAQV+V P M EFL  +LT VRSV VK + I L EL +RP K K++
Sbjct:  103 ATHRDFLGSILGTGITRDKVGDILVLGERGAQVIVVPEMVEFLETALTQVRSVAVKTQRIDLSELKIRPPKKKEM 177          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: A0A6P1A6K7_9CYAN (Photosystem II S4 domain protein n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1A6K7_9CYAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.310e-19
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0
Query:    2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            A HRDFLGAI+  GV R+ +GDI+V GERGAQV+V P + EFL  +LT VRSV VKV+PI + EL VRP K K++
Sbjct:  103 ATHRDFLGAILGTGVVREKVGDIVVLGERGAQVIVVPELGEFLQTNLTQVRSVPVKVQPIEIGELKVRPPKKKEM 177          
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Match: L8LN63_9CHRO (Photosystem II S4 domain protein n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LN63_9CHRO)

HSP 1 Score: 89.4 bits (220), Expect = 1.310e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    1 MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKMKDV 76
            +A HRDFLGAI+  G+ RD IGDI+V GERGAQV+V P M +FL G++  VRSV V+ +PI + EL + PAK K++
Sbjct:  102 VATHRDFLGAILGTGIVRDKIGDIIVLGERGAQVIVVPEMVDFLCGTVVQVRSVSVQTKPIAVGELKITPAKTKEI 177          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6136.16823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH66_ECTSI4.770e-4298.68RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5J7Q1_9PHAE2.440e-3997.37S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A845X2R8_9CYAN3.130e-2162.67Photosystem II S4 domain protein n=1 Tax=Spirulina... [more]
A0A251WKT0_9CYAN1.740e-2061.33Photosystem II S4 domain protein n=2 Tax=unclassif... [more]
A0A2W7D4B6_9CYAN3.370e-2060.00Photosystem II S4 domain protein n=1 Tax=Snowella ... [more]
UPI0019F7DA763.370e-2062.67Photosystem II S4 domain protein n=1 Tax=Pleurocap... [more]
A0A8J7JD65_9CYAN3.430e-2061.33Photosystem II S4 domain protein n=1 Tax=Lusitanie... [more]
A0A563VPY8_9CYAN9.320e-2061.33Photosystem II S4 domain protein n=1 Tax=Hyella pa... [more]
A0A6P1A6K7_9CYAN1.310e-1961.33Photosystem II S4 domain protein n=1 Tax=Kamptonem... [more]
L8LN63_9CHRO1.310e-1956.58Photosystem II S4 domain protein n=1 Tax=Gloeocaps... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..67
e-value: 6.1E-14
score: 53.7
IPR040591YlmH, putative RNA-binding domainPFAMPF17774YlmH_RBDcoord: 3..65
e-value: 6.5E-13
score: 48.8
NoneNo IPR availablePANTHERPTHR32219:SF3coord: 3..76
NoneNo IPR availablePANTHERPTHR32219FAMILY NOT NAMEDcoord: 3..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6136contigEcto-sp13_S_contig6136:1067..2553 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6136.16823.1mRNA_Ecto-sp13_S_contig6136.16823.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6136 962..5509 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6136.16823.1 ID=prot_Ecto-sp13_S_contig6136.16823.1|Name=mRNA_Ecto-sp13_S_contig6136.16823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTS
VRSVKVKVRPIPLEELAVRPAKMKDVRPARPPPPRLRSERRHGHEPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040591YlmH_RBD