prot_Ecto-sp13_S_contig596.16520.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig596.16520.1
Unique Nameprot_Ecto-sp13_S_contig596.16520.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length314
Homology
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 597 bits (1539), Expect = 3.340e-202
Identity = 298/312 (95.51%), Postives = 304/312 (97.44%), Query Frame = 0
Query:    3 MKSSRANPELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDWDQALAKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVAGASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGATRGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLGVKGTPPVQDENSKGGDTEESSRGRECADWPDEERSGDGSKGRPVEMRSEGLGALLE 314
            MK+SRA+PELVLKVLLVG PKAGKTSLVRR+CDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHG+IGQGAEGVLYVMDVTSRESLQAVDDWDQAL+KFYPPWTCKLLVGHKADLPAYVVNDEALSLYVAGASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGA RGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLG KG PPVQDENSK GDTEE+SRGRECADWP EER GDGSKGRPVEMRSEGLG LLE
Sbjct:    1 MKTSRASPELVLKVLLVGGPKAGKTSLVRRLCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYVMDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVAGASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGAARGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLGGKGAPPVQDENSKDGDTEENSRGRECADWPREERFGDGSKGRPVEMRSEGLGPLLE 312          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A0A1U6S2_ENTIV (Rab17, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U6S2_ENTIV)

HSP 1 Score: 83.6 bits (205), Expect = 2.070e-15
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0
Query:    9 NPELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDW-----DQALAKFYPPWTCKLLVGHKADLPAYVVNDEALS 144
            N  + +KVL+VG P +GKTS++ + CD AF E Y  T+G + +   + TY+GR V++ LWDVAG    A      +   GA   L V D+TS++S++AV  W     D+ L  F       +LVG+K+DL    +N++ L+
Sbjct:    5 NDVIRMKVLVVGGPASGKTSMIHQFCDGAFEEIYQPTIGVEFSS-KFVTYEGRQVEIRLWDVAGQDYYAAMTR--VYFSGAISALVVCDITSKDSIEAVVKWKANIDDRVL--FNEQKIPVILVGNKSDL----LNEKELT 136          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A6U3NLC3_9STRA (Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3NLC3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.910e-15
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   11 ELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQL--TAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDWDQALAKFYPPWTCKLLVGHKADLPA-YVVNDE 141
            + + K++L+G    GK+ L+ R  D AF E Y+ T+G D           + VKL +WD AG +   T    ++    +GA+G++ V DVTS++S   V+DW + + ++    TCKLLVG+K+D  A  VV +E
Sbjct:   16 DYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTV-KIDKKTVKLQIWDTAGQERFRTITSAYY----RGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADRVVTEE 144          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-14
Identity = 47/132 (35.61%), Postives = 75/132 (56.82%), Query Frame = 0
Query:   13 VLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQL--TAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDWDQALAKFYPPWTCKLLVGHKADLPA-YVVNDE 141
            + K++L+G    GK+ L+ R  D AF E Y+ T+G D           + VKL +WD AG +   T    ++    +GA+G++ V DVTS++S   V+DW + + ++    TCKLLVG+K+D  A  +V +E
Sbjct:   17 LFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTV-KIDKKTVKLQIWDTAGQERFRTITSAYY----RGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADKIVKEE 143          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A8B7XLP5_ACAPL (ras-related protein Rab-7L1-like isoform X2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XLP5_ACAPL)

HSP 1 Score: 80.5 bits (197), Expect = 3.190e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 0
Query:   11 ELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDWDQAL-AKFY----PPWTCKLLVGHKADLPAYVVNDEALSLYVAGASGFKGW 156
            E   KVL++G P+ GKTS +RR     F ++Y++T G D  +          V LH+WD+AG           +  + A   + + D+TSR S + V +W Q L AK       P  C LL+G+K+DL  YVV DE ++L     + F GW
Sbjct:    3 EKYFKVLIIGDPRTGKTSFMRRYVGHQFTDNYIETQGCDFGLKRIRRSPTELVGLHIWDIAGQDAFRHLTR--VFYRSASAAVVMFDLTSRRSFEHVKEWKQDLDAKVAMPDGSPVPC-LLLGNKSDLDQYVVTDEEITLMSQDLN-FVGW 149          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A1B2U6V3_9AGAR (Rab family protein n=1 Tax=Volvariella volvacea TaxID=36659 RepID=A0A1B2U6V3_9AGAR)

HSP 1 Score: 79.0 bits (193), Expect = 2.540e-13
Identity = 53/137 (38.69%), Postives = 72/137 (52.55%), Query Frame = 0
Query:   10 PELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQ----LTAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDWDQALAKFYPPWTCKLLVGHKADLPAYVVNDEA 142
            P+  +KV+L+G P  GKTSL+ R  DK +R     T G D TV    T +G+ VKL +WD AGS+    LT+Q          A+GV+ V DVT +ES  ++  W   L K       K+LVG+K D   Y+    A
Sbjct:   67 PQRTIKVILLGNPSVGKTSLLLRFLDKEWRSTAANT-GVDTTVKGM-TVRGQRVKLVIWDTAGSERFRTLTSQYYRR------AQGVILVYDVTDKESFDSLSHWYSELEKHAATPLVKMLVGNKTDKEEYLHQISA 195          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A7K4D0C9_9ARCH (GTP-binding protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A7K4D0C9_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 3.010e-13
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   15 KVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDWDQALAKFYP--PWTCKLLVGHKADLP--AYVVNDEALSLYVA 148
            K+++VG P  GKTSLV +  +KAFR+ Y+ T+G ++T     +++G    + LWD+AG     +   H     GA GV+ V D+T +ESL ++ DW + + K     P  C LL G+K DLP    V   EA S+  A
Sbjct:  170 KLVIVGDPNVGKTSLVIQFTEKAFRKTYLPTIGVNITEKTI-SHEGEQFTMVLWDIAGQSKFQKMRKH--FYSGASGVILVFDLTKKESLPSIKDWYEDVKKSLEGQPLNCVLL-GNKNDLPDQRQVPELEAKSMAAA 303          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A524CI74_9ARCH (GTP-binding protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524CI74_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 4.140e-13
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 0
Query:    6 SRANPELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIGQGAEGVLYVMDVTSRESLQAVDDW-DQALAKFYPPWTCKLLVGHKADLPAYVVNDE 141
            S A+ + + K+LL+G P  GKTSL+ R  D  F  DY  T+G +       T  G  +KL +WD+AG    A   H  +  + AEG++ V DVTS  S  ++  W   AL K     T   ++G+K DL   +  +E
Sbjct:    3 SDADVKYIYKILLLGDPGVGKTSLLIRFIDNTFDPDYKSTIGVNFLTKLVRTPSGELIKLVIWDIAGQARAASYRH--LYYRAAEGIILVYDVTSPSSFYSLSSWVSDALTKTQEN-TITAVIGNKIDLDRSIGREE 136          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A7C1LPC6_9ARCH (GTP-binding protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A7C1LPC6_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 9.400e-13
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0
Query:   11 ELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDVT----VVPYGTYQGRPVKLHLWDVAGSQLTAQPCH---HGIIGQGAEGVLYVMDVTSRESLQAVDDWDQALAKFYPPWTCKLLVGHKADLPAYVVNDE 141
            E++ KV++VG P  GKTSL+R+   + F  +Y+ T+G ++      +   T +   V L LWD+AG     QP     H     GA+GV+ V D+T   S   V++W Q   K+      ++L+G+K DL     NDE
Sbjct:   18 EMIFKVIVVGDPAVGKTSLLRKFSSEKFEYEYIPTVGVNIVKEQVAIKDNTGKDVTVSLMLWDIAG-----QPQFYMLHRPYFNGADGVMLVYDITRSSSFSNVNNWWQTCVKYALSSAPRILIGNKIDL-----NDE 145          
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Match: A0A524CM82_9ARCH (GTP-binding protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524CM82_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 1.000e-12
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   13 VLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLG--FDVTVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIG----QGAEGVLYVMDVTSRESLQAVDDWDQALAKFYPPWTCKLLVGHKADL 133
            + KV+L G    GKTSLV R C+ AF+++Y+ T+G  F    V    Y    VKL LWD+AG +      H   +     +GA GV+YV D+T R S   + +W   + K     T  +LVG+K D+
Sbjct:    8 IYKVILCGDGGVGKTSLVLRYCENAFKDNYIMTIGSNFSTKEVKLEEYPNYSVKLQLWDLAGQK------HFSFVRPGFYKGATGVIYVHDLTRRSSFSNLPNWQSEVEKEIGRKT-SILVGNKLDI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig596.16520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE3.340e-20295.51SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0A1U6S2_ENTIV2.070e-1537.59Rab17, putative n=1 Tax=Entamoeba invadens IP1 Tax... [more]
A0A6U3NLC3_9STRA5.910e-1535.82Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID... [more]
A0A7S2N4U8_9STRA1.040e-1435.61Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A8B7XLP5_ACAPL3.190e-1435.10ras-related protein Rab-7L1-like isoform X2 n=1 Ta... [more]
A0A1B2U6V3_9AGAR2.540e-1338.69Rab family protein n=1 Tax=Volvariella volvacea Ta... [more]
A0A7K4D0C9_9ARCH3.010e-1337.68GTP-binding protein n=1 Tax=Candidatus Lokiarchaeo... [more]
A0A524CI74_9ARCH4.140e-1335.04GTP-binding protein n=1 Tax=Candidatus Lokiarchaeo... [more]
A0A7C1LPC6_9ARCH9.400e-1334.06GTP-binding protein (Fragment) n=2 Tax=root TaxID=... [more]
A0A524CM82_9ARCH1.000e-1237.01GTP-binding protein n=1 Tax=Candidatus Lokiarchaeo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 37..53
score: 24.83
coord: 56..78
score: 27.97
coord: 120..133
score: 42.27
coord: 14..35
score: 34.4
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..214
e-value: 2.3E-8
score: -5.2
NoneNo IPR availableGENE3D3.40.50.300coord: 5..154
e-value: 8.5E-28
score: 98.8
NoneNo IPR availablePANTHERPTHR24070:SF408RAS-RELATED PROTEIN RAB-42coord: 14..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..314
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..19
NoneNo IPR availablePROSITEPS51419RABcoord: 9..284
score: 10.672
IPR001806Small GTPasePFAMPF00071Rascoord: 15..135
e-value: 4.8E-19
score: 68.5
IPR020849Small GTPase superfamily, Ras-typePANTHERPTHR24070FAMILY NOT NAMEDcoord: 14..145
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig596contigEcto-sp13_S_contig596:16198..21524 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig596.16520.1mRNA_Ecto-sp13_S_contig596.16520.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig596 16141..21524 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig596.16520.1 ID=prot_Ecto-sp13_S_contig596.16520.1|Name=mRNA_Ecto-sp13_S_contig596.16520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=314bp
MNMKSSRANPELVLKVLLVGAPKAGKTSLVRRMCDKAFREDYVQTLGFDV
TVVPYGTYQGRPVKLHLWDVAGSQLTAQPCHHGIIGQGAEGVLYVMDVTS
RESLQAVDDWDQALAKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVAGA
SGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSV
SEAVRTLLGHVFRSGGATRGASRPAGVLGLGASAGRATPLPSDHLQDALE
TMELLGLGVKGTPPVQDENSKGGDTEESSRGRECADWPDEERSGDGSKGR
PVEMRSEGLGALLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras-type
IPR027417P-loop_NTPase