prot_Ecto-sp13_S_contig5957.16515.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5957.16515.1
Unique Nameprot_Ecto-sp13_S_contig5957.16515.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length433
Homology
BLAST of mRNA_Ecto-sp13_S_contig5957.16515.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI)

HSP 1 Score: 664 bits (1712), Expect = 1.130e-232
Identity = 373/430 (86.74%), Postives = 376/430 (87.44%), Query Frame = 0
Query:    1 MTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRVYDGLLRVRTSAEFNVNRDGVYGNLTADPRLENLWHVASCYSGQSFAMDFEFRGAXXXXXXXXXXXXXXXXTVQSAFAYTAVVPDADASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQALMANPLIVGVARQVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSPVSLAAGEAAGEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRAEQAETFKGFFAEIIRDVLQTS 430
            MTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRV    L                                      SFAMDFEFRGA        XXXXX   TVQSAFAYTAVVPDA+ASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQALMANPLIVGVARQVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSP SLAAGEAAGEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRAE+AETFKGFFAEI+RDVLQTS
Sbjct:  361 MTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRVLRRPLA-------------------------------------SFAMDFEFRGAGGGAELQWXXXXXASATVQSAFAYTAVVPDANASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQALMANPLIVGVARQVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSPASLAAGEAAGEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRAEKAETFKGFFAEIVRDVLQTS 753          
BLAST of mRNA_Ecto-sp13_S_contig5957.16515.1 vs. uniprot
Match: A0A5A7Q7G6_STRAF (Sec23/sec24 transport family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q7G6_STRAF)

HSP 1 Score: 142 bits (359), Expect = 2.960e-33
Identity = 121/405 (29.88%), Postives = 198/405 (48.89%), Query Frame = 0
Query:   33 LLQPRVYDGLLRVRTSAEFNVNRDGVYGNLTADPRLENLWHVASCYSGQSFAMDFEFRGAXXXXXXXXXXXXXXXXTVQSAFAYTAVVPDADASSEAASDNAINGGEATNAARMVTV-RRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQ---ALMANPLIVGVARQVFGLLQSPVL--HPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAV-TEASPACRIFVVDTFWRVVVHYADSPVSLAAGEAAGEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRA--EQAETFKGFFAEIIRDVLQ 428
            L +P  ++ +LRVRTS+EF +     YG+   DP  EN+ H+  C S  ++A DFEF                   T+Q AF Y+ +VP         SD     G  ++     ++ RRLR+ TV+ D++  +  +  + DP  V ++L H+V+  +  +G  E R LL +WL N  +   ++   +E  R       GG+  +Q   A    P +  + R VF LL++P+L  H      D R+ L    S+L+P SL++A+YP +  Y TPD +     SLSR A+ T  SP   IF++D F  ++V Y+ +           ++ LPFPP ++  +   +   +  R +   ++V+ R G  +A  FE  L+E++ +  +    A  F  F  EI RDV++
Sbjct:  326 LSRPYAFNCVLRVRTSSEFKLGHS--YGHFFPDPEYENVQHIICCDSFATYAYDFEF-----VNDAGFSRHSRERPTLQIAFQYSVIVP---------SDEPFPLGSGSSKRDKYSLKRRLRIRTVQLDTARHINEIYDSVDPEVVLSILVHEVILSSLENGVREGRILLHEWLVNLTAQYNDAFKTAEYTR-------GGLTTSQFDVAFTQCPQLQQLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLTLAIYPLLASYETPDRQAFPRHSLSRAALLTSGSP---IFLLDAFTTLIVFYSST----------ADSALPFPPPQNCLLRTTINKLKQGR-IITPKLVFIRGGQDDATMFENYLIEEQDVEGSGITSAMGFVSFLDEINRDVVE 693          
BLAST of mRNA_Ecto-sp13_S_contig5957.16515.1 vs. uniprot
Match: A0A5A7PKM6_STRAF (Sec23/sec24 transport family protein (Fragment) n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PKM6_STRAF)

HSP 1 Score: 128 bits (322), Expect = 1.890e-29
Identity = 103/336 (30.65%), Postives = 163/336 (48.51%), Query Frame = 0
Query:   33 LLQPRVYDGLLRVRTSAEFNVNRDGVYGNLTADPRLENLWHVASCYSGQSFAMDFEFRGAXXXXXXXXXXXXXXXXTVQSAFAYTAVVPDADASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQ---ALMANPLIVGVARQVFGLLQSPVL--HPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAV-TEASPACRIFVVDTFWRVVVHYADSPVSLAAGEAAGEAPLPFPPSRD 362
            L +   ++ +LR+RTS+EF +     YG+   DP  EN+ H+  C S  ++A DF+F                   T+Q AF Y+ VVP    S        + G  ++  A+    RRLR+ TV+ D++  +  +  + DP  V ++L H+V+  +  +G  E R LL +WL N  +   ++   +E  R       G +  +Q   A    P +  + R VF LL++P+L  H      D R+ L    S+L+P SL++A+YP +  Y TPD +     SLSR A+ T  SP   IF +D F  +VV Y+ +           ++ LPFPP +D
Sbjct:    7 LSRSHAFNCVLRIRTSSEFKLGHS--YGHFFPDPEYENVQHIICCDSFATYAYDFDF-----VNDAGFSRHSRERPTLQIAFQYSVVVPSDGPS--------LQGSGSSKRAKYSLKRRLRIRTVQLDTAHHISEIYDSVDPEVVLSILVHEVILSSMENGVREGRILLHEWLVNLTAQYNDAFKIAEYAR-------GNLTTSQVDVAFTQCPQLQSLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLTLAIYPLLVSYETPDKQAFPRHSLSRAALLTSGSP---IFFLDAFTTLVVFYSST----------ADSALPFPPPQD 307          
BLAST of mRNA_Ecto-sp13_S_contig5957.16515.1 vs. uniprot
Match: A0A5J4Z423_PORPP (zf-Sec23_Sec24 domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z423_PORPP)

HSP 1 Score: 82.4 bits (202), Expect = 4.760e-13
Identity = 103/403 (25.56%), Postives = 158/403 (39.21%), Query Frame = 0
Query:   28 EVCAELLQPRVYDGLLRVRTSAEFNVNRDGVYGNLTADPRLENLWHVASCYSGQSFAMDFE---FRGAXXXXXXXXXXXXXXXXTVQSAFAYTAVVPDADASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFIS---GLAESLAASEGGRESAIPGGGG---------VEQAQALMANPLIVGVARQVFGLLQSPVLHPTKGIA----------DERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSPVSLAAGEAAGEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPG--TPEAFFFEETLLED 403
            ++   L +   + G+LR+RT+ EF V R      L A         + + Y+  SFAM  E                        +Q A+ YT V  D   +                   M   R LRV T    ++ S  ++    D   V  VL HK +  A+  G  EA  +LRDWLAN +      A    +S    + +  G GG           + +AL + P + G+ R VFGL++S +    K             DE+V+L    +SL PESL   +YP + G+ T +   +  L LS +++        +F++D +  VV+ Y               A   +PP  DS + Q +      RP  G  +   R G  TP++  F   L+ED
Sbjct:  537 DLVRSLTEATAFQGVLRIRTTPEFQVAR------LYASSFQSMASFLDAGYTVYSFAMRGERSCVAADLAFCNIEGFMGSVLAPCMQVAYRYTRVYQDKQGN-------------------MRLARLLRVCTRSFGTAQSKTLIQKECDMPVVLKVLLHKFLLAAQDQGEEEASLMLRDWLANLVCCGPQAASQTESSSSETKGSFSGAGGFMASSTGTTASRVEALASIPALAGIPRIVFGLMRSRLTARAKDAGNGENVPCLADDEQVALRLLWTSLPPESLVQCVYPRLVGFETIESSASRELVLSSKSLLLHDGKYTVFLLDAYDTVVIFYTQ------------RAKCTYPPPIDSKLMQTVVHVSKDRPF-GARIELCREGSSTPQSRLFSSLLIED 901          
BLAST of mRNA_Ecto-sp13_S_contig5957.16515.1 vs. uniprot
Match: A0A7S3BZ76_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZ76_9VIRI)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-8
Identity = 51/148 (34.46%), Postives = 67/148 (45.27%), Query Frame = 0
Query:   59 YGNLTADPRLENLWHVASCYSGQSFAMDFEFRGAXXXXXXXXXXXXXXXXTVQSAFAYTAVVPDADASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLA 206
            YG+L AD  ++NL+H        +F  DFEF                   TVQ A  Y+ +VP              + G A   A  V  RRLRV T +   +  V  +  +     VA +LAHKV++ +R  G AEAR LLRDWLA
Sbjct:    2 YGHLAADADVDNLYHAVCLDECSTFMFDFEFESGDGFDYDVLP-------TVQLAIRYSLLVPTGGXXXXXXXGETSSNGAAARGAYRVE-RRLRVVTAQARVAKKVSTLHDSCRADVVAGLLAHKVIAASREEGAAEARLLLRDWLA 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5957.16515.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFU2_ECTSI1.130e-23286.74Sec23_helical domain-containing protein n=2 Tax=Ec... [more]
A0A5A7Q7G6_STRAF2.960e-3329.88Sec23/sec24 transport family protein n=1 Tax=Strig... [more]
A0A5A7PKM6_STRAF1.890e-2930.65Sec23/sec24 transport family protein (Fragment) n=... [more]
A0A5J4Z423_PORPP4.760e-1325.56zf-Sec23_Sec24 domain-containing protein n=1 Tax=P... [more]
A0A7S3BZ76_9VIRI1.310e-834.46Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006900Sec23/Sec24, helical domainPFAMPF04815Sec23_helicalcoord: 173..286
e-value: 1.6E-10
score: 40.7
NoneNo IPR availableGENE3D1.20.120.730coord: 158..302
e-value: 5.2E-9
score: 38.0
NoneNo IPR availableGENE3D2.60.40.1670coord: 19..157
e-value: 2.3E-7
score: 33.1
NoneNo IPR availablePANTHERPTHR13803SEC24-RELATED PROTEINcoord: 24..423
NoneNo IPR availablePANTHERPTHR13803:SF10coord: 24..423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5957contigEcto-sp13_S_contig5957:890..5191 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5957.16515.1mRNA_Ecto-sp13_S_contig5957.16515.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5957 752..5638 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5957.16515.1 ID=prot_Ecto-sp13_S_contig5957.16515.1|Name=mRNA_Ecto-sp13_S_contig5957.16515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=433bp
MTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRVYDGLLRVRTSAE
FNVNRDGVYGNLTADPRLENLWHVASCYSGQSFAMDFEFRGAGGGAELQW
DEDEDASATVQSAFAYTAVVPDADASSEAASDNAINGGEATNAARMVTVR
RLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGL
LRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQALMANPLIVGVAR
QVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATP
DIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSPVSLAAGEAA
GEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETL
LEDRPLPRAEQAETFKGFFAEIIRDVLQTSQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006900Sec23/24_helical_dom