prot_Ecto-sp13_S_contig588.16390.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig588.16390.1
Unique Nameprot_Ecto-sp13_S_contig588.16390.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length311
Homology
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BLAST of mRNA_Ecto-sp13_S_contig588.16390.1 vs. uniprot
Match: D7FVD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.180e-45
Identity = 117/246 (47.56%), Postives = 120/246 (48.78%), Query Frame = 0 
Query:   66 MPGEASATRGGHADGQIDLAEVQLEWHELFRAVLDAEEGREHSTREKRQWHVAARGYAMVKHGALATVQHNLSSFEEVDAGASIPGYTDDEASDEEVDQARGMFDDGSSGRAPGNEPTACRATRNLGGAILQHDTGVTFGCDAAVVSPVFFGYMSTTEADVDAENAKERASLDREEARVIEKQRVGRNLELAREREAASKRREARERTVVAMEAEFERGRQKRITDLQTAKKVMAAEEYRPVLKQW 311
            MPGEASATRG HADGQIDLAEVQLEWHELFRAVLDA+E REHST                                                                               RNLGGAI QHDT VTFGCDAAVVSPVFFGYMSTTEADVDAENAK                                         VV MEAEFERGRQKRIT+LQTAKKVMAA+EY PVLKQW
Sbjct:    1 MPGEASATRGEHADGQIDLAEVQLEWHELFRAVLDADEEREHST-------------------------------------------------------------------------------RNLGGAISQHDTEVTFGCDAAVVSPVFFGYMSTTEADVDAENAK-----------------------------------------VVTMEAEFERGRQKRITELQTAKKVMAADEYGPVLKQW 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig588.16390.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVD1_ECTSI1.180e-4547.56Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 228..248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig588contigEcto-sp13_S_contig588:4346..11298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig588.16390.1mRNA_Ecto-sp13_S_contig588.16390.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig588 4346..11411 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig588.16390.1 ID=prot_Ecto-sp13_S_contig588.16390.1|Name=mRNA_Ecto-sp13_S_contig588.16390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MTMGGVLSATSRSNIDHDDEDIWNAQHDILTAKLGFFRNWRTEDVEVVLD
RFRTRIRPSDDSSDSMPGEASATRGGHADGQIDLAEVQLEWHELFRAVLD
AEEGREHSTREKRQWHVAARGYAMVKHGALATVQHNLSSFEEVDAGASIP
GYTDDEASDEEVDQARGMFDDGSSGRAPGNEPTACRATRNLGGAILQHDT
GVTFGCDAAVVSPVFFGYMSTTEADVDAENAKERASLDREEARVIEKQRV
GRNLELAREREAASKRREARERTVVAMEAEFERGRQKRITDLQTAKKVMA
AEEYRPVLKQW
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