prot_Ecto-sp13_S_contig58088.16263.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58088.16263.1
Unique Nameprot_Ecto-sp13_S_contig58088.16263.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length78
Homology
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.900e-41
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query:    1 RKRKTEQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 75
            RKRKTEQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR
Sbjct:   74 RKRKTEQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 148          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.020e-33
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 0
Query:    6 EQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 75
            ++ EAGVVLK++VSNFMCHRKL+VPLCK VNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKM DFIR
Sbjct:  172 KKSEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIR 241          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: A0A6V2GEJ9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GEJ9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.810e-25
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 0
Query:    8 PEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRSES 78
            PEAGV+ K++V NFMCHRKL+V LC++VNFING NGSGKSAILAA+QICLGA A  THRA+ + + +R E+
Sbjct:  100 PEAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGAGAKRTHRARNLKELVRKEA 170          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: A0A7S1VYB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VYB1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.580e-25
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 0
Query:    8 PEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKM 70
            PEAGV+ K++V NFMCHRKL+V LC++VNFING NGSGKSAILAA+QICLGA A  THRA+ +
Sbjct:  100 PEAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGAGAKRTHRARNL 162          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: A0A7S4RG96_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG96_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.900e-24
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 0
Query:    8 PEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRSES 78
            PEAGV+ K++V NFMCHRKL+V LC++VNFING NGSGKSAILAA+QICLGA A  THRA+ + + +R E+
Sbjct:  100 PEAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGAGAKRTHRARNLKELVRKEA 170          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: A0A8J9SZH1_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SZH1_PHATR)

HSP 1 Score: 98.2 bits (243), Expect = 6.640e-24
Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    6 EQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRSES 78
            + PEAG++ +V+V NFMCH KL V LC++VNFI+G+NGSGKSAILAA+QICLGA A  THRA+ +   +R ++
Sbjct:   59 QPPEAGIIKEVYVENFMCHPKLRVTLCRNVNFIHGQNGSGKSAILAAIQICLGASASRTHRARNLKGLVRKDA 131          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.740e-24
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 0
Query:    9 EAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 75
            E+GV+L++ V NFMCHR L+V LC+++NFING NGSGKSAILAALQICLGA+A +THRA K+ D IR
Sbjct:   73 ESGVILRIDVKNFMCHRHLTVDLCRNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIR 139          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA)

HSP 1 Score: 102 bits (255), Expect = 8.520e-24
Identity = 46/70 (65.71%), Postives = 60/70 (85.71%), Query Frame = 0
Query:    9 EAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRSES 78
            EAG++ +V+V NFMCHRKLSV LC++VNFI+G+NGSGKSAILAA+Q+CLGA A  THRA+ + D +R E+
Sbjct:  112 EAGIIQEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEA 181          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: B8BRT7_THAPS (Smc-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRT7_THAPS)

HSP 1 Score: 102 bits (254), Expect = 1.260e-23
Identity = 46/70 (65.71%), Postives = 60/70 (85.71%), Query Frame = 0
Query:    9 EAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRSES 78
            EAG++ +V+V NFMCHRKLSV LC++VNFI+G+NGSGKSAILAA+Q+CLGA A  THRA+ + D +R E+
Sbjct:   98 EAGIINEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEA 167          
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Match: W7U0X2_9STRA (Structural maintenance of chromosomes 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0X2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.200e-23
Identity = 45/67 (67.16%), Postives = 59/67 (88.06%), Query Frame = 0
Query:    9 EAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 75
            E GV++K++  NFMCHRKLS+ LC +VNFI+G+NGSGKSAILAALQICLGA+A++THR  +++D IR
Sbjct:  146 ETGVIVKIYCENFMCHRKLSINLCPNVNFIHGQNGSGKSAILAALQICLGARANVTHRGARLSDMIR 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58088.16263.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI1.900e-41100.00Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI6.020e-3388.57Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6V2GEJ9_9STRA3.810e-2567.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1VYB1_9STRA9.580e-2573.02Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4RG96_9STRA1.900e-2467.61Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
A0A8J9SZH1_PHATR6.640e-2460.27Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A836CML4_9STRA6.740e-2470.15P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2KU12_9STRA8.520e-2465.71Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B8BRT7_THAPS1.260e-2365.71Smc-like protein n=1 Tax=Thalassiosira pseudonana ... [more]
W7U0X2_9STRA3.200e-2367.16Structural maintenance of chromosomes 6 n=2 Tax=Mo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 13..78
e-value: 4.5E-17
score: 64.9
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 4..76
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 15..64
e-value: 6.9E-12
score: 46.3
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 4..76
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58088contigEcto-sp13_S_contig58088:52..809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58088.16263.1mRNA_Ecto-sp13_S_contig58088.16263.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58088 52..809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58088.16263.1 ID=prot_Ecto-sp13_S_contig58088.16263.1|Name=mRNA_Ecto-sp13_S_contig58088.16263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
RKRKTEQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAIL
AALQICLGAKAHLTHRAKKMADFIRSES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR027132SMC6
IPR027417P-loop_NTPase