prot_Ecto-sp13_S_contig5755.16171.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5755.16171.1
Unique Nameprot_Ecto-sp13_S_contig5755.16171.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length236
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5755.16171.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 3.320e-142
Identity = 217/235 (92.34%), Postives = 222/235 (94.47%), Query Frame = 0 
Query:    1 RSLPTLRPIVSVSLSGAGRMIPPPWSLRGSGCSDGGGGGGRDWRVLLPTGRGVEGAGVRGFGVVDSFQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQTMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTEQKKIPVNKALAAYRELKAMHGWLSTRRKRKEKIPTTQEELHVMATDPSGTMLMNFMSVKRSNSGKPSFAF 235
            RSLPTLRPIVS S+SGAGRM PP  SLRGSGCS GGGGGGRDWRVLLPTGRGVEGAGVRGFGV+DS QDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQ MKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVT +    VNKALAAYRELKAMHGWLSTRRKRKE+IP+TQEELHVMATDPSGTMLMNFM VKRSNSGKPSFAF
Sbjct:    5 RSLPTLRPIVSASVSGAGRMAPPSCSLRGSGCS-GGGGGGRDWRVLLPTGRGVEGAGVRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTE---DVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSGKPSFAF 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5755.16171.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI7_ECTSI3.320e-14292.34SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 73..93
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 81..208
e-value: 3.3E-7
score: 32.0
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 78..187
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 108..184
e-value: 3.0E-4
score: 21.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5755contigEcto-sp13_S_contig5755:3246..8129 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5755.16171.1mRNA_Ecto-sp13_S_contig5755.16171.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5755 3246..8129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5755.16171.1 ID=prot_Ecto-sp13_S_contig5755.16171.1|Name=mRNA_Ecto-sp13_S_contig5755.16171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
RSLPTLRPIVSVSLSGAGRMIPPPWSLRGSGCSDGGGGGGRDWRVLLPTG
RGVEGAGVRGFGVVDSFQDKIINRNTAKQEKQFKEQMEELSLKESFNLDD
FAKIIEEPLDKFSAKLPWNKSREELQTMKMQKKVLEGLTPLQRKNPESIR
HGHRQRIADRAGVTEQKKIPVNKALAAYRELKAMHGWLSTRRKRKEKIPT
TQEELHVMATDPSGTMLMNFMSVKRSNSGKPSFAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036891Signal_recog_part_SRP54_M_sf
IPR004125Signal_recog_particle_SRP54_M