prot_Ecto-sp13_S_contig5735.16139.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5735.16139.1
Unique Nameprot_Ecto-sp13_S_contig5735.16139.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length332
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5735.16139.1 vs. uniprot
Match: Q8QKU6_ESV1K (EsV-1-208 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKU6_ESV1K)

HSP 1 Score: 651 bits (1680), Expect = 8.970e-236
Identity = 323/331 (97.58%), Postives = 326/331 (98.49%), Query Frame = 0 
Query:    1 MSIKTCLSRGGGADCTKDDLCVLLPTSNPRGGKVCVPANSPPVLNNPANISDPEIELLKTIVSSISHIDLGDRFDKELREMYAPLVYYVNRKLRSEVAGMTGNIPWGTLADRLATMVHEELTHSTCVICFYELNDENNQQSVMFPSCCGGQQAFHKKCFRRAIRTSGTCPSCRANISMETLRGEEEAAVHLELALRPLPSRTLHISLAALNNQRRRCVDKLNHWWEIAKQESREETQRVLRGDRELQLQENLRHDLGREIDLGHDPDGRLFERWDTIDAEINQRRNQIIIETETLGLVTVGPSGDLELTTRMKFIYFFIMGFVVSKLINLS 331
            MSIKTCLSRGGGADCTKDDLCVLLPTSNPRGGKVCVPANSPPVLNNPA+ISDPEIELLKTIVSSISHIDLGDRFDKELREMYAPLVYYVNRKLRSEVAGMTGNIPWGTLADRLATMVHEELTHSTCV+CFYELNDENNQQSVMFPSCCGGQQAFHKKCFRRAIRTSGTCPSCRANISMETLR EEEAAVHLELALRPLPSRTLHISLAALNNQRRRCVDKLN WWEIAKQESREETQRVLRGDRELQLQENLRHDLGREIDLGHDPDGRLFERWDTIDAEINQRRNQI IE E+LGLVTVGPSGDLELTTRMKFIYFFIM FVVSKLINLS
Sbjct:   20 MSIKTCLSRGGGADCTKDDLCVLLPTSNPRGGKVCVPANSPPVLNNPADISDPEIELLKTIVSSISHIDLGDRFDKELREMYAPLVYYVNRKLRSEVAGMTGNIPWGTLADRLATMVHEELTHSTCVLCFYELNDENNQQSVMFPSCCGGQQAFHKKCFRRAIRTSGTCPSCRANISMETLREEEEAAVHLELALRPLPSRTLHISLAALNNQRRRCVDKLNRWWEIAKQESREETQRVLRGDRELQLQENLRHDLGREIDLGHDPDGRLFERWDTIDAEINQRRNQIRIERESLGLVTVGPSGDLELTTRMKFIYFFIMAFVVSKLINLS 350
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5735.16139.1 vs. uniprot
Match: Q8QNP1_ESV1K (EsV-1-20 n=2 Tax=root TaxID=1 RepID=Q8QNP1_ESV1K)

HSP 1 Score: 360 bits (923), Expect = 7.430e-121
Identity = 178/330 (53.94%), Postives = 234/330 (70.91%), Query Frame = 0 
Query:    1 MSIKTCLSRGGGADCTKDDLCVLLPTSNPRGGKVCVPANSPPVLNNPANISDPEIELLKTIVSSISHIDLGDRFDKELREMYAPLVYYVNRKLRSEVAGMTGNIPWGTLADRLATMVHEELTHSTCVICFYELNDENNQQSVMFPSCCGGQQAFHKKCFRRAIRTSGTCPSCRANISMETLRGEEEAAVHLELALRPLPSRTLHISLAALNNQRRRCVDKLNHWWEIAKQ-ESREETQRVLRGDRELQLQENLRHDLGREIDLGHDPDGRLFERWDTIDAEINQRRNQIIIETETLGLVTVGPSGDLELTTRMKFIYFFIMGFVVSKLIN 329
            MSI+ C SRGGGA+CT+D+LC+L P++ P GG +CVPA SPPVL+ PA+ISDPEI+LLK ++SS+S+IDLGDR D EL+EMYAPLVY+VN K+RSEVAG + NIPWGTLADRLA M+  EL H+TC IC  ELND  ++ SV++PSCCGG+Q  H+KCFR A+  SG CPSCRA I+ME LR EE  A HLE AL P PSR +  SLA   ++++R V++LNH WE A+Q  +   T  + R  R L+L    R D+   +D G D DGR  +  + IDA I +   +I++   +LG+ TVGP+G +EL     ++ F +MG V   LI+
Sbjct:    1 MSIENCFSRGGGAECTRDELCILQPSTQPGGGNICVPATSPPVLSEPADISDPEIKLLKIMISSLSNIDLGDRLDNELKEMYAPLVYHVNTKIRSEVAGASANIPWGTLADRLANMILRELEHTTCPICITELNDREDRSSVIYPSCCGGRQVLHQKCFREAVTNSGKCPSCRATITMEKLRVEERTAEHLERALLPFPSRAMQFSLAVFRDRKQRLVEQLNHMWERAQQMPNLSRTNEIQR--RRLELYRIQRRDIAWGVDNGLDDDGRFAQTLERIDANIARLVYEILVSRRSLGMATVGPNGSIELKNGTVYLIFLVMGIVGGYLIH 328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5735.16139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKU6_ESV1K8.970e-23697.58EsV-1-208 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q8QNP1_ESV1K7.430e-12153.94EsV-1-20 n=2 Tax=root TaxID=1 RepID=Q8QNP1_ESV1K[more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 119..244
e-value: 7.4E-10
score: 41.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 125..173
e-value: 1.6E-7
score: 31.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 126..173
score: 9.288
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..313
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 331..331
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 314..330
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 119..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5735contigEcto-sp13_S_contig5735:1226..2221 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5735.16139.1mRNA_Ecto-sp13_S_contig5735.16139.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5735 1226..2221 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5735.16139.1 ID=prot_Ecto-sp13_S_contig5735.16139.1|Name=mRNA_Ecto-sp13_S_contig5735.16139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
MSIKTCLSRGGGADCTKDDLCVLLPTSNPRGGKVCVPANSPPVLNNPANI
SDPEIELLKTIVSSISHIDLGDRFDKELREMYAPLVYYVNRKLRSEVAGM
TGNIPWGTLADRLATMVHEELTHSTCVICFYELNDENNQQSVMFPSCCGG
QQAFHKKCFRRAIRTSGTCPSCRANISMETLRGEEEAAVHLELALRPLPS
RTLHISLAALNNQRRRCVDKLNHWWEIAKQESREETQRVLRGDRELQLQE
NLRHDLGREIDLGHDPDGRLFERWDTIDAEINQRRNQIIIETETLGLVTV
GPSGDLELTTRMKFIYFFIMGFVVSKLINLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING